Pairwise Alignments

Query, 273 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

 Score =  127 bits (320), Expect = 4e-34
 Identities = 78/253 (30%), Positives = 129/253 (50%), Gaps = 3/253 (1%)

Query: 12  SQTAVRQASALAVQYSFSVIGALLLLIIGWLAAAFLQRWAFQGLSRIRGFDAT--LAGFF 69
           S + V   ++ AVQ+ F +    LL+++     A + R   +     +    +  +  FF
Sbjct: 287 SNSLVNWLASNAVQHLFQLF-IFLLILLAAKGGAKVTRTVVRSAVNSKNIRISHLMQDFF 345

Query: 70  AGGIRYVVLILVIVMVLGQFGVQTASILAALGAAGLAIGLALQGTLQNIAAGIMLLVLRP 129
                 VV ++ I++ L Q G+  A +L   G AG+ IG ALQ TL N AAG+MLL+ RP
Sbjct: 346 VSMSGKVVWVIGILVGLSQIGLNLAPVLTGFGIAGVIIGFALQDTLSNFAAGMMLLIYRP 405

Query: 130 FRVGEYIETSTVSGTIIEIGLFATELKTSDGLYRLAPNSTLWNVPITNYSRFPSRRHELS 189
           F VG+++    V G +  + L  T ++T D    + PNS +W   I N +    RR ++ 
Sbjct: 406 FDVGDFVHAGGVDGKVSHMSLVNTTIRTFDNQIIIVPNSKIWGDVIKNVTHERIRRVDMV 465

Query: 190 LTVKNDEDMAAAQDMLMTVVRSESRILLDPAPVTFVDSVTADSATVKLRYWVRSDNYFVT 249
             +   +D+  A+ +L  +V+S   +L  P P   V ++   S    +R WV++D+Y+  
Sbjct: 466 FGIGYSDDLLKAEAVLTDIVKSHPAVLKTPEPNIKVHTLNTSSIDFIVRPWVKTDDYWDV 525

Query: 250 TRDVTKAMRLAFD 262
             DVTK ++L FD
Sbjct: 526 YWDVTKEVKLRFD 538