Pairwise Alignments

Query, 247 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 214 a.a., Uncharacterized low-complexity proteins from Pseudomonas stutzeri RCH2

 Score = 62.0 bits (149), Expect = 9e-15
 Identities = 47/152 (30%), Positives = 70/152 (46%), Gaps = 6/152 (3%)

Query: 63  SNLDSAMLYGTDFTYTDLR-----GSSLKGANLEKAKLIRTALGEANLQGANLTKVEAYR 117
           S   +A L G D +  DLR     G++L GANL  A L    L +A+L GA L +    +
Sbjct: 35  SQCPNADLRGADLSNQDLRRINLAGANLSGANLRHANLDLANLEKADLTGATLNRASLQQ 94

Query: 118 SDFSAADATNAKFVNAEMQRTKFEKTKLDGTDFTKAELGRADFEGASLNGSKFSLTNLSR 177
           ++   A+ TNA+ +  +      +  +  G D T A L  A   GA ++GSK    +L  
Sbjct: 95  ANLRLANFTNARLIAVQGWGLFAQAAQFKGADLTGAYLEFARMSGAKMHGSKLHAADLEM 154

Query: 178 ARFGGATLGGPVDFTSAFLLLTRIEGVDLSTA 209
                A L G  D T A L   ++   +L+ A
Sbjct: 155 TWLSKADLKG-ADLTDANLQEAKLNDANLADA 185



 Score = 60.8 bits (146), Expect = 2e-14
 Identities = 45/155 (29%), Positives = 62/155 (40%), Gaps = 5/155 (3%)

Query: 38  ASCRTDAMAGIDWRECNKRMLMLGSSNLDSAMLYGTDFTYTDLRGSSLKGANLEKAKLIR 97
           + C    + G D    + R + L  +NL  A L   +    +L  + L GA L +A L +
Sbjct: 35  SQCPNADLRGADLSNQDLRRINLAGANLSGANLRHANLDLANLEKADLTGATLNRASLQQ 94

Query: 98  TALGEANLQGANLTKVE-----AYRSDFSAADATNAKFVNAEMQRTKFEKTKLDGTDFTK 152
             L  AN   A L  V+     A  + F  AD T A    A M   K   +KL   D   
Sbjct: 95  ANLRLANFTNARLIAVQGWGLFAQAAQFKGADLTGAYLEFARMSGAKMHGSKLHAADLEM 154

Query: 153 AELGRADFEGASLNGSKFSLTNLSRARFGGATLGG 187
             L +AD +GA L  +      L+ A    A L G
Sbjct: 155 TWLSKADLKGADLTDANLQEAKLNDANLADAVLTG 189



 Score = 34.7 bits (78), Expect = 2e-06
 Identities = 20/70 (28%), Positives = 31/70 (44%)

Query: 60  LGSSNLDSAMLYGTDFTYTDLRGSSLKGANLEKAKLIRTALGEANLQGANLTKVEAYRSD 119
           +  + +  + L+  D   T L  + LKGA+L  A L    L +ANL  A LT    + + 
Sbjct: 137 MSGAKMHGSKLHAADLEMTWLSKADLKGADLTDANLQEAKLNDANLADAVLTGARRHYAT 196

Query: 120 FSAADATNAK 129
           F   +    K
Sbjct: 197 FQGTNMEGCK 206



 Score = 29.6 bits (65), Expect = 5e-05
 Identities = 28/105 (26%), Positives = 35/105 (33%)

Query: 6   RLNIVGKTRFGAAVAAGVVLAVVSLSGGPLGAASCRTDAMAGIDWRECNKRMLMLGSSNL 65
           RL      R  A    G+        G  L  A      M+G            L  + L
Sbjct: 98  RLANFTNARLIAVQGWGLFAQAAQFKGADLTGAYLEFARMSGAKMHGSKLHAADLEMTWL 157

Query: 66  DSAMLYGTDFTYTDLRGSSLKGANLEKAKLIRTALGEANLQGANL 110
             A L G D T  +L+ + L  ANL  A L       A  QG N+
Sbjct: 158 SKADLKGADLTDANLQEAKLNDANLADAVLTGARRHYATFQGTNM 202



 Score = 25.8 bits (55), Expect = 7e-04
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 45  MAGIDWRECNKRMLMLGSSNLDSAMLYGTDFTYTDLRGSSLKG 87
           + G D  + N +   L  +NL  A+L G    Y   +G++++G
Sbjct: 162 LKGADLTDANLQEAKLNDANLADAVLTGARRHYATFQGTNMEG 204