Pairwise Alignments

Query, 778 a.a., two component sensor kinase from Agrobacterium fabrum C58

Subject, 1236 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  163 bits (412), Expect = 6e-44
 Identities = 124/419 (29%), Positives = 203/419 (48%), Gaps = 47/419 (11%)

Query: 362 VIGIAMDVTEQHRLAQRYAEADQRLADAIESTSEAFVLWDKNDRLVMCNIHYQKAYGLPD 421
           +I +  DVT ++  A++   +++R   A+++  +    W  +   ++CN  Y    G   
Sbjct: 561 LIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYYSMLGY-- 618

Query: 422 SVLVAGTEKSTVYAAAARPVVERRVADPDQSGLSRTTEVQLADDRWLQINERRTRDGGLV 481
                     T    A    ++  +   D+  +    E  L D       E R R     
Sbjct: 619 ---------KTNEFPALLSTIDSLIHPDDRIRVQEYREQYLKDPIGAYEIEFRMR----A 665

Query: 482 SVGTDITLLKRHQ--ERLRDSE-RRLMATIGDLSASQHKLERQKTELSDANANYLAEKER 538
             G    +L R +  E  +D++ +R++ T  D++  +HK               L  K+ 
Sbjct: 666 KTGQYHWMLSRGRVVEFTQDAQPKRMVGTHKDIT--RHKSNE---------VALLEAKQD 714

Query: 539 AQAANRAKSEFLANMSHELRTPLNAILGFSEILQNEMFGPVGSPKYSEYARDIHD----S 594
           A+ AN  KSEFLANMSHE+RTP+NAI+G  ++         G    +E  +D  D    S
Sbjct: 715 AELANLYKSEFLANMSHEIRTPMNAIIGMLQL--------AGRTSLTEQQKDYLDKASFS 766

Query: 595 GKHLLNVINDILDMSKIEAGHMRINRETIDLAPLIEETLRLTAIQAEQKNITV--QQKVC 652
            + LL +INDILD SKIEAG + + +    L  +++ +L L A++A++K I +     V 
Sbjct: 767 AQSLLRIINDILDFSKIEAGKLELEKVAFPLDKVLDHSLDLNALRAQEKGIELLLYAPVS 826

Query: 653 AGLTMQGDRRAMKQIMLNILSNAVKFTGDG----GRIALRTHVHEAAMILTIADTGIGIP 708
           AG+ ++GD   + Q+++N+LSNAVKFT +G    G   +    H   +   + DTGIGI 
Sbjct: 827 AGIMLKGDPLRLGQVLINLLSNAVKFTQNGEIELGCEDVGERDHRITLKFWVRDTGIGIS 886

Query: 709 AQALQKIGQPFEQVQSQYAKSQGGSGLGLAISRSLVKLHGGTMKIRSCEGRGTVVTIII 767
            +   K+   F Q      +  GG+GLGL+IS+ LV + GGTM++ S  G G+  +  +
Sbjct: 887 REQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVESEPGVGSTFSFTV 945



 Score = 50.1 bits (118), Expect = 7e-10
 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 6/166 (3%)

Query: 233 LVVLYAYYMQVKRARDADDIFAESNLRVETALSRGRCGLWDFDLSSRRMFWSGSLYEILG 292
           L+ L A +  V R  ++ +    S  R   A+     GLWD+ L S ++  + + Y +LG
Sbjct: 558 LMGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYYSMLG 617

Query: 293 LPPKAAPLSFSDAARMMHSEDG-NLYELARAVGCGNLRQIDQIFRMRHSKGHYVWLRARA 351
                 P   S    ++H +D   + E         +   +  FRMR   G Y W+ +R 
Sbjct: 618 YKTNEFPALLSTIDSLIHPDDRIRVQEYREQYLKDPIGAYEIEFRMRAKTGQYHWMLSRG 677

Query: 352 QVIRTNNG---PRVIGIAMDVT--EQHRLAQRYAEADQRLADAIES 392
           +V+         R++G   D+T  + + +A   A+ D  LA+  +S
Sbjct: 678 RVVEFTQDAQPKRMVGTHKDITRHKSNEVALLEAKQDAELANLYKS 723



 Score = 34.7 bits (78), Expect = 3e-05
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 14/144 (9%)

Query: 374 RLAQRYAEADQR-------LADAIESTSEAFVLWDKNDRLVMCNIHYQKAYGLPDSVLVA 426
           R  +R  E  +R       L   ++S  EA V  DK    + CN   ++  G  ++ ++ 
Sbjct: 441 RRTERLKETTERREREYALLRSLLDSIPEAIVFKDKEGHYLGCNKAAERMLGFSEAEMIG 500

Query: 427 -GTEKSTVYAAAARPVVERRVADPDQSGLSRTTEVQLA------DDRWLQINERRTRDGG 479
             +E+ T     +R   E      ++  L    +++LA      D   L    RR    G
Sbjct: 501 LSSEELTSPEQGSRIRAEDEQVLTERKPLRYQEKIELAGKPVLLDTLKLPFYNRRGELMG 560

Query: 480 LVSVGTDITLLKRHQERLRDSERR 503
           L++V  D+T      E+LR SE R
Sbjct: 561 LIAVWRDVTREYESAEQLRLSEER 584