Pairwise Alignments

Query, 388 a.a., phage head portal protein from Agrobacterium fabrum C58

Subject, 432 a.a., prophage LambdaSo, portal protein, HK97 family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 77.8 bits (190), Expect = 5e-19
 Identities = 71/251 (28%), Positives = 115/251 (45%), Gaps = 16/251 (6%)

Query: 64  RMVAETSAAVSWLIY----DGDEELADHPLLALLS-QPSAHMGGPDFFEALYGHLMLSGN 118
           R ++ET A +   +Y    DG      + L  +LS +P+A M    F+EA+   L+L GN
Sbjct: 67  RRISETVAMLPLGLYERQSDGGRIQVQNSLSTVLSIKPNADMTAMQFWEAVLASLLLKGN 126

Query: 119 AYIEPLMIGGRLRELHLLRPDRVSIVEGPDGWPVAYEYRAEGRAARRIAAERDGLGLLHL 178
           A+IE    GG +  L  L P R+ I +  D   + Y Y     + R+I  +     ++H+
Sbjct: 127 AFIEIHRSGGEIIALDFLMPHRMDI-DLDDSGSLIYWYTPRNGSRRQIKKQN----MMHI 181

Query: 179 KLFHPLDDRVGFAPLASAGAALDLHNAASHWNKRLLDNSARPSGALVYQPKEGGNLSTEQ 238
             F  LD  +G + ++          +A   +     N    + A     K    ++ EQ
Sbjct: 182 PAFS-LDGLIGLSTISYGANVFGGAMSAEDVSASTFKNGMTKTVAF----KVDRVMNKEQ 236

Query: 239 YDRLKRELEEGYQGAMNAGRPLLLEGGLDWKAMGLSPRDMDFLEARNGAARDIALSLGVP 298
                RE  +   GAMNAG+  +LE G+  + +G++P D   LE+RN +  +I     V 
Sbjct: 237 RAEF-REYVKTITGAMNAGKSPVLEQGITPELIGINPIDAQLLESRNYSVEEICRWFLVD 295

Query: 299 PMLIGIPGDNT 309
           P LIG  G ++
Sbjct: 296 PSLIGFGGKDS 306