Pairwise Alignments

Query, 279 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 320 a.a., chaperon-like protein for quinone binding in photosystem II from Synechococcus elongatus PCC 7942

 Score = 58.5 bits (140), Expect = 2e-13
 Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 18/221 (8%)

Query: 5   ILVIGSTGTIGTPLVKALVARGESVKAASRSGKPTN-----GAEGVRFDYTDHATFADAF 59
           +LV+G+TGT+G  + +  +  G  V+   RS K  N     G + VR D T   +   A 
Sbjct: 3   VLVVGATGTLGRQIARRALDEGHRVRCLVRSPKRGNFLREWGCDLVRGDLTQPESLTFAL 62

Query: 60  DGVDRLFLMLAGGRLDTIDAL-------TPVVEEAARRKV-KIVFLSVLGVDADDSIPYR 111
           +G++ +         D++            +++ A    V + VF S++  +    +P  
Sbjct: 63  EGIEAVIDAATTRSTDSLSCYDVDWQGKVNLIKAATEAGVQRFVFCSIIDAEKHRDVPLM 122

Query: 112 QI----ELKIIASGTPYVILRPNWFADNFHSYWKAGIEHGQIA-VPGGEGKSSFIDVRDI 166
            I    E  +  SG  Y ILR   F     + +   +  G+ A +       +++   DI
Sbjct: 123 DIKYCTEEFLRQSGLNYTILRLAGFMQGLIAEFAIPVLEGRTAFITQDSDPIAYLSTLDI 182

Query: 167 ADSAAAALTSDAFNGKAFNLTGPQAFGYAEAAALISQAIGK 207
           A  A AALT+ A   +   + GP+A+   E   L  +  GK
Sbjct: 183 ARFAVAALTTPATEKQTLPVVGPKAWSGLEIFRLCERLSGK 223