Pairwise Alignments

Query, 335 a.a., cation efflux system protein from Agrobacterium fabrum C58

Subject, 394 a.a., cation efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  317 bits (811), Expect = 4e-91
 Identities = 169/377 (44%), Positives = 230/377 (61%), Gaps = 50/377 (13%)

Query: 2   TTTSEP-------FAAAEHHHIYLGQNHERNERRVWMVIALTTVMMVAEIVAGHWFGSMA 54
           T T++P        A  +H H +  QN +  E+    V+ LT + MVAEIVAG  +GSMA
Sbjct: 7   TETAQPSNGFGHSIAQWQHPHGFSKQNAD-GEKNTRYVLYLTVITMVAEIVAGTIYGSMA 65

Query: 55  LTADGWHMSTHAGAMLISALAYLYARREARNPRFSFGTGKFGDLAGFASAVVLAVVALLI 114
           L ADGWHM THA A +I+  AY YAR+ A +P F+FGTGK   L G+ SA+ L +VAL++
Sbjct: 66  LLADGWHMGTHAAAFMITLFAYSYARKHANDPAFAFGTGKVSVLGGYTSAIALGLVALIM 125

Query: 115 AVESGLRLVSPVQIDFNQAILVAVIGLVVNLVSAVLLKDDHHHDRGHGHGHGHASHAHHG 174
            +ESG+RL++P  I FN+AI VA+IGL VN++S  LLKD H HD GH HG+ H    H  
Sbjct: 126 LIESGMRLINPENIHFNEAIFVALIGLSVNVLSMFLLKDHHSHDHGHSHGNSHGHSLHQV 185

Query: 175 HGSHAH----------------------------------HDHGSHAQHGAKG------G 194
           H  H H                                  HDH +H+ + A G      G
Sbjct: 186 HDKHEHTAHKDNHCCDGLEHHAADHDHDHDHDHDHDHDHDHDHDNHSHNHAHGHSHGHSG 245

Query: 195 RDNNLRAAYLHVLADALTSVLAIVALLLGKWNGWNFLDPLMGIVGGLVIARWSWGLIRST 254
            D+NLRAAY HVLADALTSVLAI ALL GK+ G  +LDP+MGIVG ++I+RWSWGLI+ T
Sbjct: 246 HDHNLRAAYFHVLADALTSVLAIAALLFGKYMGLTWLDPIMGIVGAIIISRWSWGLIQQT 305

Query: 255 ATTLVDAVPLTDDLPQEIRDTVETEED-RITDLHVWQVGPGHHAAIVAIHSQAPKAPAFY 313
           +  L+D   +   L +++R+T+E   D ++ DLH+W+V   HHA + +I S +PK  +++
Sbjct: 306 SPILLDG-GVNVALQRKVRETIEAVPDHQVADLHIWRVSADHHAIMASIVSHSPKEASYF 364

Query: 314 KQKLAAIHELSHVTVEV 330
            Q L+   ELSH+T+E+
Sbjct: 365 NQLLSQFPELSHITIEL 381