Pairwise Alignments

Query, 541 a.a., ATP-dependent DNA ligase from Agrobacterium fabrum C58

Subject, 562 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) LigC from Pseudomonas fluorescens FW300-N2E2

 Score =  297 bits (761), Expect = 6e-85
 Identities = 208/566 (36%), Positives = 284/566 (50%), Gaps = 43/566 (7%)

Query: 1   MKAFATLLDRLVLTPSRNGKLKLLTDYFRDTPDPDRGYGLAAIAGTLDLKSVKPAMLREL 60
           MKAFA L   L  T S N KL  + DYF   P  D  + +  ++G    + V   +LREL
Sbjct: 1   MKAFAELYAELDATTSSNAKLAAMQDYFSKAPPQDAAWAVYFLSGGRPRQLVPVKILREL 60

Query: 61  VME--RMDEVLFRYSYDYVGDLAETISLVWGNIGGVDDAEAQDPRLGEVVTLMNSLGRTE 118
            ++   +   LF  SY  VGDLAETISLV       +   + D  L   +       R E
Sbjct: 61  AVQVSGLSLWLFEESYQAVGDLAETISLVLP-----ESPHSSDEGLALWIEEKLLPLRGE 115

Query: 119 VRGAVRDLLD----RLDTSSRFAFLKLATGSLRIGVSARLARQALADFADKDITEIETLW 174
             G + + L     +LD  S    +KL TGS R+GVS  L  +ALA   + D   +    
Sbjct: 116 SPGVLAERLPALWAQLDRPSLMLCIKLITGSFRVGVSKLLVTRALAGMVNLDSKRVAQRL 175

Query: 175 HGLT-----PPYTTLFSWLEGNSDRPLLATPA----IFHSVMLATPVADGDLDALDPADY 225
            G T     P   +    +   SD             F +  L+ PV   D      +D+
Sbjct: 176 VGYTDLSHRPTAASYLKLIAAESDDEHAQRGGQPYPFFLAHALSAPVEQFDTLLGPASDW 235

Query: 226 AAEWKWDGIRVQLSRAGETRKLYSRSGDDISGAFPDV---LDAIEFEGVMDGELLVGGTA 282
             EWKWDGIR Q+ +      ++SR  D ++  FP++     A+    V+DGE++V    
Sbjct: 236 QVEWKWDGIRAQVIKRDGHLWVWSRGEDLVTERFPELHSLAQALPDGTVIDGEIVVWKAP 295

Query: 283 RS------------NNLTRTFSDLQQRLNRKTVTAKMRDDYPAFIRAYDLLFEGESDIRA 330
           +S                + F  LQQR+ RKT+  K+ DD P  + AYDLL     D R+
Sbjct: 296 QSVTEDAFDPDAPLQPAVQPFVLLQQRIGRKTLGKKILDDAPVVVMAYDLLEWQGEDWRS 355

Query: 331 QTYLERRNRLSDIIERAPHDRFDLSPLIGFSSWSELDTLRAAPPDPVIEGVMIKRRDSTY 390
           +   ERR ++  +I R        SP +    W +L   R       +EG+M+K R++ Y
Sbjct: 356 RPQAERREQVEALIARVRSPVLLPSPTVTGQDWFDLARQREGSRRLGVEGMMLKARNALY 415

Query: 391 QAGRAK--GPWFKWKRDPYNIDAVMMYAQRGHGKRSSYYSDFTFGVWAEGEDGEQ--LVP 446
             GR K  G W+KWK DP+++DAV++YAQRGHG+R+S YSD+TF VW    D  +  LVP
Sbjct: 416 GVGRTKDMGVWWKWKVDPFSVDAVLIYAQRGHGRRASLYSDYTFAVWDNPPDSRERTLVP 475

Query: 447 VGKAYFGFTDAELEVLDKFVRDNTVERFGPVRAVRATPDFGFVLEVAFEGINRSTRHKSG 506
             KAY G TDAE+  +D  VR  TVE+FGPV +V  T     V E+ FEGI  S RHKSG
Sbjct: 476 FAKAYSGLTDAEMRQVDNIVRKTTVEKFGPVSSVTPT----LVFELGFEGIALSNRHKSG 531

Query: 507 VAMRFPRIARLRADKLPAEADRLSTL 532
           +A+RFPR+ R R DK   EAD L+TL
Sbjct: 532 IAVRFPRMLRWRQDKTVEEADTLATL 557