Pairwise Alignments

Query, 541 a.a., ATP-dependent DNA ligase from Agrobacterium fabrum C58

Subject, 569 a.a., ATP-dependent DNA ligase from Pseudomonas stutzeri RCH2

 Score =  326 bits (835), Expect = 2e-93
 Identities = 219/578 (37%), Positives = 302/578 (52%), Gaps = 52/578 (8%)

Query: 1   MKAFATLLDRLVLTPSRNGKLKLLTDYFRDTPDPDRGYGLAAIAGTLDLKSVKPAMLREL 60
           MKAFATL  RL  T S N KL  + DYFRD    D  + +  +AG    + V   +LRE 
Sbjct: 1   MKAFATLYSRLDATTSSNAKLAAMRDYFRDADPADAAWAVYFLAGGRPRQLVPTRVLRET 60

Query: 61  VMER--MDEVLFRYSYDYVGDLAETISLVWGNIGGVDDAEAQDPRLGEVVTLMNSLGRTE 118
            M+   + E LF  SY  VGD+AETISL+        D +     + + +  +      E
Sbjct: 61  AMQASGLPEWLFEESYLAVGDMAETISLLMPEAKHSSD-DGLAVWMQDKLLPLRGQPPEE 119

Query: 119 VRGAVRDLLDRLDTSSRFAFLKLATGSLRIGVSARLARQALADFADKDITEIETLWHGLT 178
           +   +  L  +LD  S    +KL TG+ R+GVS  L  +ALA   D D   +     G  
Sbjct: 120 LAERLPALWAQLDRLSLMVCIKLITGAFRVGVSKLLVTRALASLVDLDPKRVAQRLVG-- 177

Query: 179 PPYTTLFSWLEGNSDRPLLATPA-------------IFHSVMLATPVADGDLDALDPADY 225
             YT L         R L+A  +              F +  L  PV + D+    P ++
Sbjct: 178 --YTDLSHRPSAEGYRALIAEESEHEHAQRGGQPYPFFLAHSLQAPVEEFDMLLGAPENW 235

Query: 226 AAEWKWDGIRVQLSRAGETRKLYSRSGDDISGAFPDVLD---AIEFEGVMDGELLVGGTA 282
             EWKWDGIR QL +      ++SR  + +S  FP++ +    +    V+DGE+LV   A
Sbjct: 236 FIEWKWDGIRAQLVKRDGQIWVWSRGEELVSERFPELCELAGCLPDGTVIDGEILVWKHA 295

Query: 283 RSNNLTRTFSD-------------------LQQRLNRKTVTAKMRDDYPAFIRAYDLLFE 323
                T  F+                    LQQR+ RK +TAK+  D P  + AYDLL  
Sbjct: 296 PGGPSTDLFAQPESDDADTTERFGVQPFALLQQRIGRKNLTAKVLQDAPVAVLAYDLLEW 355

Query: 324 GESDIRAQTYLERRNRLSDIIERAPHDRFDLSPLIGFSSWSELDTLRAAPPDPVIEGVMI 383
              D R + + ERR +L  ++ + P+ R  LSPL+    W++L   R A  +  +EG+MI
Sbjct: 356 QGDDWRQREHRERRQQLEAVVGQCPNPRLMLSPLVSGDDWADLARQREASRERGVEGMMI 415

Query: 384 KRRDSTYQAGRAK--GPWFKWKRDPYNIDAVMMYAQRGHGKRSSYYSDFTFGVWAEGEDG 441
           K R + Y  GR K  G W+KWK DPY++DAV++YAQRGHG+R+S Y+D+TF VW +GE G
Sbjct: 416 KARAAQYGVGRTKDVGVWWKWKIDPYSVDAVLIYAQRGHGRRASLYTDYTFAVW-DGEPG 474

Query: 442 E---QLVPVGKAYFGFTDAELEVLDKFVRDNTVERFGPVRAVRATPDFGFVLEVAFEGIN 498
           +   +LVP  KAY G TD E+  +D  VR  TVE+FGPVR+V  T     V E+ FEGI 
Sbjct: 475 DPERKLVPFAKAYSGLTDEEMRKVDAIVRKTTVEKFGPVRSVTPT----LVFELGFEGIA 530

Query: 499 RSTRHKSGVAMRFPRIARLRADKLPAEADRLSTLVAMI 536
            S+RHKSG+A+RFPR+ R R DK   EAD L TL  ++
Sbjct: 531 ASSRHKSGIAVRFPRMLRWRLDKPVQEADTLETLKELL 568