Pairwise Alignments

Query, 541 a.a., ATP-dependent DNA ligase from Agrobacterium fabrum C58

Subject, 507 a.a., Probable ATP-dependent DNA ligase LigB (polydeoxyribonucleotide synthase [ATP]) (polynucleotide ligase [ATP]) (sealase) (DNA repair protein) (DNA joinase) from Mycobacterium tuberculosis H37Rv

 Score =  118 bits (295), Expect = 6e-31
 Identities = 129/454 (28%), Positives = 193/454 (42%), Gaps = 47/454 (10%)

Query: 101 DPRLGEVVTLMNSLGRTEVRGAVRDLLDRLDTSSRFAFLKLATGSLRIGVSARLARQALA 160
           D  L ++ TL     + +    V +L      + +   L+L  G LR G    +   A+A
Sbjct: 81  DATLSKIGTLPGKGSQAQRAALVAELFSAATEAEQTFLLRLLGGELRQGAKGGIMADAVA 140

Query: 161 DFADKDITEIE-----------TLWHGLTPPYTTLFSWLEGNSDRPLLATPAIFHSVMLA 209
             A      ++               GL+      F+   G    P+LA          A
Sbjct: 141 QAAGLPAATVQRAAMLGGDLAAAAAAGLSGAALDTFTLRVGRPIGPMLA--------QTA 192

Query: 210 TPVADGDLDALDPADYAA--EWKWDGIRVQLSRAGETRKLYSRSGDDISGAFPDVLDAIE 267
           T V D    AL+        E K DG RVQ+ RA +  ++Y+RS DD++   P+V++A  
Sbjct: 193 TSVHD----ALERHGGTTIFEAKLDGARVQIHRANDQVRIYTRSLDDVTARLPEVVEATL 248

Query: 268 FEGVMDGELLVGGTARS---NNLTRTFSDLQQRLNRKTVTAKMRDDYPAFIRAYDLLFEG 324
              V D  L+  G A +   +N  + F     R  R    A  R   P  +  +D+L   
Sbjct: 249 ALPVRD--LVADGEAIALCPDNRPQRFQVTASRFGRSVDVAAARATQPLSVFFFDILHRD 306

Query: 325 ESDIRAQTYLERRNRLSDIIE-RAPHDRFDLSPLIGFSSWSELDTLRAAPPDPVIEGVMI 383
            +D+      ER   L  ++  R   DR   S     +++  LD   AA      EGVM 
Sbjct: 307 GTDLLEAPTTERLAALDALVPARHRVDRLITSDPTDAANF--LDATLAAGH----EGVMA 360

Query: 384 KRRDSTYQAGRAKGPWFKWKRDPYNIDAVMMYAQRGHGKRSSYYSDFTFGVWAEGEDGEQ 443
           K   + Y AGR    W K K   + +D V++  + G G+R    S+   G       G  
Sbjct: 361 KAPAARYLAGRRGAGWLKVK-PVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPATGG-- 417

Query: 444 LVPVGKAYFGFTDAELEVLDKFVRDNTVERFGPVRA--VRATPDFGFVLEVAFEGINRST 501
            V VGK + G TDA L+       +  V   GP     V+  P+   V+EVA +G+ RS+
Sbjct: 418 FVMVGKTFKGMTDAMLDWQTTRFHEIAV---GPTDGYVVQLRPEQ--VVEVALDGVQRSS 472

Query: 502 RHKSGVAMRFPRIARLRADKLPAEADRLSTLVAM 535
           R+  G+A+RF R+ R RADK PAEAD +  + A+
Sbjct: 473 RYPGGLALRFARVVRYRADKDPAEADTIDAVRAL 506