Pairwise Alignments

Query, 438 a.a., chloride channel protein from Agrobacterium fabrum C58

Subject, 574 a.a., chloride channel (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  105 bits (261), Expect = 5e-27
 Identities = 93/339 (27%), Positives = 158/339 (46%), Gaps = 36/339 (10%)

Query: 108 LKLAFGKVVLTVAG---------LLSGASIGREGPTVQVGA-SIMLQAARWGGMAQAKGL 157
           +KL +GK+ L  A          L +  S+GREGP + +GA S  + A ++     +  +
Sbjct: 116 VKLHYGKIPLQSAAGQFFQALFALGTNFSVGREGPAIHLGAVSASVLAEKFNLPDNSVRI 175

Query: 158 ILA-GSAAGIAAAFNTPLAGIVFAIEEMSKTYESRANGLVLTAVILSGLASLALVGSYTY 216
           + A G AAGIAA FN PLA ++F IE + + Y+      ++ + I   ++S  + G+   
Sbjct: 176 MCASGIAAGIAATFNAPLAAVIFVIEVIVREYKVHYFFPIMLSAICGAVSSQLVFGNVHE 235

Query: 217 FGTSSVMAKTMMDWLLVLICGVGGGAFGALFSAGALRLSARIRRFAQTMPLKRMLAVAAA 276
           F    V+   +  + ++ I G+  G   A F+   ++++A      Q  PL   L +A  
Sbjct: 236 FDRIQVIHIPLDHYPILAIGGIVLGCAAAFFNYALIKVTAT----GQNWPLIYRLLLA-- 289

Query: 277 CGLASAVIGIATGGATFGTGYEQARAAIEGEAAPAF---FFIEKLAATFLAMMSGIPGGI 333
            G  + +IG+    A  GTG      AI    +        + K+ AT  A+  GIPGG+
Sbjct: 290 -GSITTLIGLILPQA-LGTGDLAISEAISEHPSLLLLIALLVAKIVATIAAIGLGIPGGL 347

Query: 334 FAPSLSVGAGFGSTMAGL-------LGTSIGLGAIVGMAGYFAGVVQAPMTAFVIILEMT 386
             P   +GA  G+ +A +       +   +GL  ++GM       + AP+ A V +LEMT
Sbjct: 348 IGPLYGIGALIGAILALVSAILFPSIAPYVGLYTVIGMTAMMGVCLSAPLAALVALLEMT 407

Query: 387 GNHEGVIPIM-------VAAMLGYLTSRLFSREPLYHGL 418
            +   ++P M       + A  G+ T+ +F ++    GL
Sbjct: 408 NDASIILPAMFVTIPAFLIAYQGFKTNSIFFKQLEIMGL 446



 Score = 39.7 bits (91), Expect = 3e-07
 Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 37/215 (17%)

Query: 23  VGAIAVGIISVAFAWAADRAQHLFSAVTSAGE-WAFLLPLLITPLGFTLCAWLAISVFPN 81
           +G I +G  +  F +A  +       VT+ G+ W  +  LL+     TL       + P 
Sbjct: 254 IGGIVLGCAAAFFNYALIK-------VTATGQNWPLIYRLLLAGSITTLIGL----ILPQ 302

Query: 82  AGGSG---IPQAIAARHLRDDADRSRLLSLKLAFGKVVLTVAGLLSGASIGREGPTVQVG 138
           A G+G   I +AI+          S LL + L   K+V T+A +  G   G  GP   +G
Sbjct: 303 ALGTGDLAISEAISEHP-------SLLLLIALLVAKIVATIAAIGLGIPGGLIGPLYGIG 355

Query: 139 ASI-----MLQAARWGGMAQAKGL-ILAGSAAGIAAAFNTPLAGIVFAIEEMSKTYESRA 192
           A I     ++ A  +  +A   GL  + G  A +    + PLA +V  +E  +       
Sbjct: 356 ALIGAILALVSAILFPSIAPYVGLYTVIGMTAMMGVCLSAPLAALVALLEMTNDA----- 410

Query: 193 NGLVLTAVILSGLASLALVGSYTYFGTSSVMAKTM 227
             ++L A+ ++  A L    +Y  F T+S+  K +
Sbjct: 411 -SIILPAMFVTIPAFLI---AYQGFKTNSIFFKQL 441