Pairwise Alignments

Query, 603 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 950 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  104 bits (259), Expect = 2e-26
 Identities = 75/253 (29%), Positives = 125/253 (49%), Gaps = 14/253 (5%)

Query: 1   MQAVALENDVIRRFASGQMFPMAKLVLETAFQPIVEATTGTIFGYESLMRG-HDRLGFSS 59
           M  + LEN + +    GQ        LE  +QP +     ++   E+L+R  H  LG  +
Sbjct: 697 MHYLQLENQLRKALEVGQ--------LEVFYQPRLSLADDSLEAAEALVRWRHPELGLVA 748

Query: 60  PLALLDQAAADGELKAFEQMLASRAL--AKFSTLPDFSSATLFLNLDVRLIPHGDVILDK 117
           P   +  A   G +    + +   A   A+       ++  + +NL V+ +  G+ +   
Sbjct: 749 PAQFIPLAEETGLIIPLGEFVLREACRQARQWQQDGLAAIRVSVNLSVKQLRQGNFV--S 806

Query: 118 LVGH-LARAGIPASSICFELSERFDNTSVPEFTSLIARMRKEGFKLAIDDFGAGHGEMKL 176
           LV   L   G+PA+ +  EL+E      +    S+  ++R  G KLAIDDFG G   +  
Sbjct: 807 LVRQVLEETGLPATMLELELTESQLLDDIDNAISISEQLRALGVKLAIDDFGTGFSSLSY 866

Query: 177 LCDFPLDYLKIDRHFISGIDHLPRKQHLVRNIVNIAHVLGVRVIAEGIETEAEFLSCREF 236
           L  FP+DY+KIDR FIS ++H  +   + R I+ + H L  +V+AEG+ET+A+    +  
Sbjct: 867 LKRFPVDYVKIDRSFISELEHSSQDAAITRAIIAMVHSLERKVVAEGVETQAQMDFLKAN 926

Query: 237 GVDLVQGWLIAKP 249
             D +QG+L++ P
Sbjct: 927 HCDEIQGYLLSPP 939



 Score = 27.3 bits (59), Expect = 0.003
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 451 YCDFDNFKPFNDKYGFNAGDHAITLFSALMRRYFFAGDCFLGHIGGDDFFIGVRDW-SVE 509
           Y D D FK  N+  G  A D  +   S  +       D  +  + GD+F + +  + S+ 
Sbjct: 563 YIDLDRFKLLNESLGHEAADALLREVSRRLSTTLAEADT-IARLSGDEFVVLLDAYGSLS 621

Query: 510 ELMEILERLL 519
            L  +  RLL
Sbjct: 622 SLAHLGSRLL 631