Pairwise Alignments

Query, 1155 a.a., chromosome segregation protein from Agrobacterium fabrum C58

Subject, 1189 a.a., chromosome segregation protein SMC from Methanococcus maripaludis S2

 Score =  221 bits (564), Expect = 2e-61
 Identities = 269/1265 (21%), Positives = 540/1265 (42%), Gaps = 203/1265 (16%)

Query: 4    NKLRVVGFKSFVEPSEFIIEPGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASGMDD 63
            +++ +  FKSF + S+  I  G T ++GPNG GKSN ++ + +V+G+ S K++RA   + 
Sbjct: 5    SEIHMKNFKSF-KNSKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFNQ 63

Query: 64   VIFSGSGNRPARNTAEVGLYLDNSDRTAPAAFNDADEIQVTRRIE--------------- 108
            +I   +G R   N AEV L  DN DR  P    D+D++ ++R+++               
Sbjct: 64   LITYHNGKR--ENFAEVTLIFDNKDRKMPV---DSDKVGISRKVKINGDNNYYLIWNEEK 118

Query: 109  --RENGSVYRING---KEARAKDVQLLFADASTGARSPSMVGQGRIGELINAKPQARRQL 163
              +ENG +  +     K+ +  ++  +    S  A   +++ QG + ++I+  P  RR++
Sbjct: 119  EVKENGEIKTVKEEKRKKVKKSEILDVIGKISLSADGFNIILQGDLIKIIDTTPNERRKI 178

Query: 164  LEEAAGISGLHSRRHEAELRLRAAETNLERLEDVTAQLESQIESLKRQARQANRFKMLSA 223
            ++E +G++    +  +A+  L  A   +E+++    ++++ +E LK++   A     L+ 
Sbjct: 179  IDEISGVAEFDEKGEKAKKELEKAREFIEKIDIRINEVKNNLEKLKKEKEDAETHVKLTE 238

Query: 224  DIRAREATLLHIRWVEAKEAEGEAESALNQATNIVAEKAQGQMEAAKQQGIASLKLPELR 283
            +++A +  L                S   +  N + EK + ++EA K+  +  LK  E+ 
Sbjct: 239  ELKATKYILT---------------SKKIEFLNGILEKTKEEIEALKEMKVCFLK--EIS 281

Query: 284  EDEARVAAALQRLQIARTQLDDEANRLLRRRDELARRLSQLGEDIVREERLVADNAQILA 343
            E +A+      RLQ    +L+++ N  +    EL + + ++   +  +++ +      L 
Sbjct: 282  EYDAKSNDIRNRLQNLINELNEKGNEEIM---ELHKSIKEMEVTVDNDKKSLNGALDDLK 338

Query: 344  RLDEEEAELLDILSDSGRHADEMREAFEAAAVKLAESEAVFTSITAERAEAAAGRQQLER 403
             ++ +  +        G+   E R+  E    +  + EA   ++  E       +++L+ 
Sbjct: 339  NVNSQSEK-------KGQDLVETRQKIETIRTETLQKEAEINALKTEMENLETEKKKLKS 391

Query: 404  AIRDLSDRKLRLERQSQEASAEIDTIDEKLSGLPDP---------------AERREAVEA 448
             + +   +   L++Q ++ S  I+    +L    +                A+ +E +E 
Sbjct: 392  KVEESETQTEILKQQERKLSERINESQNELYNFKNEFNALENEINKKSFNLAKNKETIET 451

Query: 449  AEIAVE-------DALIVAEEAEAAVAEARSAEALARGPLETAKNRLNALDTEARTITKM 501
             +  +E       D   + +E E    E   ++      LE  K   + LD       K 
Sbjct: 452  LQKELEEIRSEHEDTKSLYKELEDVAVELEYSKKKVVTLLENKKEYQDRLDKSHADYIKE 511

Query: 502  LATSAAANGSFTPVAEEMTVERGYEAALGAALGD--DLESPLDASAPAYW------GGN- 552
             A   A         E+ +++R  ++ L A L    D+   L  +   Y       GGN 
Sbjct: 512  NAKIKAMKDM-----EDFSLDRAVKSVLEAKLPGVVDIAGNLGKTDAEYKTAIENAGGNR 566

Query: 553  ---------GNGA------------------------------DDPGLPQGAKPLLDYAQ 573
                      +GA                              DD G+   A  L+++  
Sbjct: 567  LNYIVVKRMDDGARAIQYLKKNNLGRTTFLPLDRINGPEALYLDDEGVVGRAIDLVEFKP 626

Query: 574  APDAL-RRALAQIGVVADVSEARRLLPSLKAGQRLVTREGALFRWDGHIASADAPGAAAL 632
              + L R       +V ++  A+ L    +A  R VT EG +    G +    +   + +
Sbjct: 627  EHENLFRYVFGNTIIVENLDYAKTLSKDHRA--RFVTLEGEVIEPSGAMIGGRSRKKSVI 684

Query: 633  RL----SQKNRLAEIEAELDEARSILEEAEDQLAAK--TEDIRSSEL--RLSEVRDRSR- 683
            ++    S+  +LAE  +ELD   S  ++  ++L  K  T   R  EL  RL  ++D    
Sbjct: 685  KVDIDTSKLEKLAEDISELDGTLSETKDEIERLQNKNATYSTRKMELESRLKIIKDLEHK 744

Query: 684  ----------------LATRQLAEAREALTSA----ERASGDLLRRRDVVSEAQNQIGAQ 723
                            L +R+L E  + L  +    ER   +  ++    +  +++I  +
Sbjct: 745  KEGILTNNGVKIKELELESRKLEEELDYLEGSKEELERKIEEFTKKISGFTSQRDRISEE 804

Query: 724  IDEIAVQEENARIEMEDAPDLSVLDLRLRESQLEVATDRGLLAEARA-RHEGVSREAESR 782
            I      E + RI++ D  ++   + +  E + E+  D  L+ E    +   ++   +  
Sbjct: 805  IASFENSEHSKRIKVIDE-NIIAFEKKKNEFENEIKRDAVLIKEVLIPKISELNSNIKEL 863

Query: 783  QRRIQAIGQERSTWASRAASAADHIATLREREEEAREEIAELDIAPEEFDEKRRNLLNEL 842
              +   + Q    + +      + +   +ER E+  +++ EL    E F++       EL
Sbjct: 864  SEKRTILEQNIQFYKNNVEKNFEILKNKKERYEDLTKDLRELTEKKEAFEK-------EL 916

Query: 843  QKTEDARRAAADRLAEAENLQRAADRVAATALSELAEAREKRGRAEERLVSAREKRLETE 902
            +     +R    R+ + E+            ++ L+  + K            E RLE E
Sbjct: 917  EILNGEKRRVYGRINQNES-----------QINSLSIDKAKY-----------ETRLEEE 954

Query: 903  HRIRETLNTEPHMAFRLTGLGPDQPKPDIRDVERDLDRLKIERERLGAVNLRAEEEQAEL 962
             R          ++  +T    +    D+  +E     L+   ++L  VN+RA ++   +
Sbjct: 955  DRKLYVCENIEQISEDITSKIKEF---DVDALESHQIDLEGHIKKLEPVNMRAIDDYQYI 1011

Query: 963  SGKLEALIKERDDIIDAVRKLRAGIQSLNREGRERLIAAFDVVNSQFQRLFTHLFGGGTA 1022
              + + L ++R D  +  +K    I+ +++  +E  +  +  V   +++++T +  GG+ 
Sbjct: 1012 VDRYDELFEKRTDYENEEKKYLHLIEEVSKRKKEVFMDVYLKVAENYEKIYTEI--GGSG 1069

Query: 1023 ELQLIESDDPLEAGLEILARPPGKKPQTMTLLSGGEQALTAMALIFAVFLTNPAPICVLD 1082
            +L L   +DP   GL I A P  KK Q++ ++SGGE++LTA+A +FA+   NPAP  VLD
Sbjct: 1070 KLSLENPEDPFSGGLLIDASPMNKKLQSLDVMSGGEKSLTALAFLFAIQHLNPAPFYVLD 1129

Query: 1083 EVDAPLDDHNVERYCNLMDEMV--ASTETRFVIITHNPITMARMNRLFGVTMAEQGVSQL 1140
            EVDA LD  N      L+ EM+  AS +++F++I+H    +++ + ++GV M E G+S+L
Sbjct: 1130 EVDAALDTKN----AGLIGEMIKNASKDSQFIVISHREQMISKSDVMYGVCM-ENGLSKL 1184

Query: 1141 VSVDL 1145
            V + +
Sbjct: 1185 VGLKI 1189