Pairwise Alignments

Query, 432 a.a., peptidase, family M16 from Agrobacterium fabrum C58

Subject, 912 a.a., pseudouridine synthase, Rsu (RefSeq) from Shewanella amazonensis SB2B

 Score =  106 bits (264), Expect = 3e-27
 Identities = 78/305 (25%), Positives = 143/305 (46%), Gaps = 24/305 (7%)

Query: 7   RLSSGLTVVTERMPHLESVALGVWIKSGSRNETTAEHGIAHLLEHMAFKGTARRTARQIA 66
           RL +GL V+    P  E+V + V  K GS++E   E G+AHLLEH+ FKGT +   + I 
Sbjct: 45  RLDNGLKVLLFPDPTKETVTVNVTYKVGSKHENYGETGMAHLLEHLVFKGTPKH--KDIP 102

Query: 67  EEIENVGGEVNAATSTETTSYYA--RVLKDHVPLAVDILADILTESLFDEDELEREKNVI 124
            E+ + G   N  T T+ T+Y+      ++++  A+ + +D +  S   + +L+ E  V+
Sbjct: 103 AELSSHGARPNGTTWTDRTNYFETFAATEENIDWALSMESDRMVNSFIAKKDLDSEMTVV 162

Query: 125 LQEIGAATDTPDDVIFDNFSGVAYRDQTIGRPILGTPDTVQSFTSGEIRHYLARNYTTDR 184
             E     ++P  +        A+     G+  +G    +++ +   ++ +  + Y  D 
Sbjct: 163 RNEFERGENSPFRITLQRMMASAFEWHNYGKSTIGARSDLENVSIERLQDFYRKYYQPDN 222

Query: 185 IFVVAAGAVDHESFVKQVEERFASLPLVPAAPPVMEKAIYT-----GGEIRET-RDLMDA 238
             ++ AG    E  +K++E  F ++P     P    + +YT      GE + T R + D 
Sbjct: 223 ATLIVAGKFAPEDMLKKIEATFGNIP----KPNRTIEPLYTVEPAQDGERQVTVRRVGDV 278

Query: 239 QVLLGFEGKAYHA-----RDFYCSQILANILGGGMSSRLFQEVREARGLCYSVYAFHWGF 293
           Q+L    G  YH       D+    +L  +L    + RL + + EA+ L  SV+  ++ +
Sbjct: 279 QLL----GTIYHVPPGAHEDYAAIDVLNEVLSATPNGRLHKSLVEAK-LASSVFGMNFQW 333

Query: 294 SDTGI 298
            D G+
Sbjct: 334 QDPGV 338



 Score = 44.3 bits (103), Expect = 2e-08
 Identities = 80/367 (21%), Positives = 139/367 (37%), Gaps = 48/367 (13%)

Query: 2   RVNVTRLSSGLTV-VTERMPHLESVALGVWIKSGSRNETTAEHGIAHLLEHMAFKGTARR 60
           R     L+SG  V + ++    ESV + +  + G     + ++ +   +  M  +G+++ 
Sbjct: 491 RTETLTLNSGTKVSLLQKKTRGESVVVRISGQFGDLRSLSGKNAVGDAVGEMLLRGSSKY 550

Query: 61  TARQIAEEIENVGGEVNAATSTETTSYYARVLKDHVPLAVDILADILTESLFDEDELERE 120
           +  QI EE++ +   +    S           + ++   +DI+ D+L    F E E E  
Sbjct: 551 SREQIKEELDKLQASLRIGGSNGNLFASVETTRANLLPVLDIVTDVLRNPSFPEKEFELY 610

Query: 121 KNVILQEIGAATDTPDDVIFDNFSGVAYRDQTIGRPILGTPD----TVQSFTSGEIRHYL 176
           K      I      P  + F+ +S             +GT +     +   T  +++ Y 
Sbjct: 611 KTETKVAIEQNLQDPQSLAFNAYSRHQSPYGKDDPRYVGTFEEQLAELDKLTLKQVKRYH 670

Query: 177 ARNYTTDRIFVVAAGAVDHESFV------------KQVEERFASLPLV--PAAP-----P 217
              Y   ++ V   G  D ++ V            KQ  +R AS P V   A+P     P
Sbjct: 671 GDFYNAKQMQVSIIGDFDKDATVSALDTLTKGWKSKQTYQRIAS-PYVKLDASPITFNTP 729

Query: 218 VMEKAIYTGGEIRETRDL-MDAQVLLGFEGKAYHARDFYCSQILAN-ILGGG-MSSRLFQ 274
             E A +         D+  DA  L                  L N ILGGG +SSRL  
Sbjct: 730 DKENATFVASLSLPVGDMDADAPAL-----------------TLGNYILGGGFLSSRLAT 772

Query: 275 EVREARGLCYSVYAFHWGFSD--TGIFGVHAATGGNDLPELIPVIVDEL-RKSSETIHQD 331
            +R+  GL Y   +F    S+   G  G +A     +L ++     +E+ R   +    D
Sbjct: 773 RLRQKDGLSYGAGSFLRLSSEDQRGSLGAYAICAPQNLAKVELGFREEIARLLKDGFTAD 832

Query: 332 EINRARA 338
           E+  A++
Sbjct: 833 EVEAAKS 839