Pairwise Alignments

Query, 971 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 855 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

 Score =  308 bits (788), Expect = 1e-87
 Identities = 200/527 (37%), Positives = 287/527 (54%), Gaps = 12/527 (2%)

Query: 430 RDRIVTT--PDISNRLGLEPGTMHGA-ARNWLPRLHPDDRDRFKATLDVLLDHRKGRLNH 486
           RD  V T  P      GL    M G  AR +   LH +D   F AT+   +D R G    
Sbjct: 306 RDLTVRTVNPAFEAMTGLLRQDMEGRPARLFASGLHEND---FLATVAAEVD-RAGLWRG 361

Query: 487 EFRIRAEDGHFHWLQIRARPVLGSNGEIIRCVGTITDITEQKNSVERLLQDAMNDNLTGL 546
           E      +G  +  ++    V    GE    V  ITDIT++K   E +   A  D LT L
Sbjct: 362 EIWGERREGPPYSGEMTVTAVRTRAGETTHYVAAITDITKRKRDEEHIRFQANFDMLTHL 421

Query: 547 PNRQVFLDRLQSILNLSPDSEGVRPTVMAIDIDRYKLVNDTLGIAAGDNILIALTRRLRR 606
           PNR + +DRL+  ++ +  + G +  VM +D+DR+K +ND+ G +AGD +L    RRLR 
Sbjct: 422 PNRHLIMDRLEQAMHQAQRT-GRQVCVMFLDLDRFKQINDSYGHSAGDEVLKLTARRLRN 480

Query: 607 LLKPQDTLARLGGDEFGLILTSERDPQRVADFADAVNKAIMVPINFANREIILTASIGLV 666
            ++  D++ RLGGDEF +IL++  D    A  A+ +  ++  P      E+    S+G+ 
Sbjct: 481 CVRISDSVGRLGGDEFIVILSNVEDQHAGAYIAEKILYSLSEPFPIGGTEVFCIPSVGIT 540

Query: 667 SWIDQQESAAGLLSDAELAMYRAKRAGGNRVEPFRPAFRTSGTDRLQMESDLRRAIERKE 726
            + D  E+A  LL +A++AMY AK+ G  R   F P         L MESDLR A+ R E
Sbjct: 541 YFPDHGETAPDLLRNADVAMYHAKQGGERRYAIFTPDMARRSLALLTMESDLRHALARDE 600

Query: 727 LSLAYQPIVKLDDGALAGFEALMRWEHPKRGNIPPSEFIPIAEASGLIEPLGMFALERAA 786
             L +QP V+  D  L G EAL+RW HP++G I P +FIP+AE SGLI P+G + L  A 
Sbjct: 601 FELHFQPKVRA-DLTLIGAEALIRWRHPEKGLINPGDFIPLAEESGLILPIGRWTLREAC 659

Query: 787 TDLMDWQHAIDKMPIFISVNISSAQLLNNELYNDVRGMLTRTRCNPQQLKLELTESVVME 846
             +M W+     +P  +SVN+S  Q  +  L   VR +L  T   P+ L LE+TE+V+  
Sbjct: 660 DRVMSWRAEGLTIP-SVSVNVSPRQFQDQTLVETVRQILVETGLEPEALDLEITETVMTG 718

Query: 847 NPEQARLVLSKLKETGLSLAMDDFGTGYSSLAYLTRFPFDTIKLDKALVANT--SDKRNV 904
           + E A   L  LK+ G++L++DDFGTGYSSL YL  FP DT+K+D+  V +   S K   
Sbjct: 719 DVEHAVGTLRALKDLGVTLSIDDFGTGYSSLNYLKTFPIDTLKIDQTFVRDVLHSGKDAA 778

Query: 905 LLRSVIAMARALDMQVVAEGIETPEDAAELARMNCHFGQSFMFGTPV 951
           ++ ++IA+AR L   VVAEG+E  E A  L   +C   Q F++  P+
Sbjct: 779 IVSTIIALARNLGFSVVAEGVEEIEQAEFLGSRDCQNFQGFLYSRPL 825



 Score = 39.3 bits (90), Expect = 1e-06
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 494 DGHFHWLQIRARPVLGSNGEIIRCVGTITDITEQKNSVE--RLLQDAMNDNLTGLPNRQV 551
           DGH  W+   AR V G + E++   GT+ DIT Q+ S E  RLL         G+    V
Sbjct: 247 DGHTIWITENARCVRGPDNEVLYYEGTVEDITAQRQSQETMRLLGKVFTSIAEGI----V 302

Query: 552 FLDRLQSILNLSPDSEGV 569
            L+R  ++  ++P  E +
Sbjct: 303 LLERDLTVRTVNPAFEAM 320