Pairwise Alignments

Query, 416 a.a., RNA methyltransferase from Agrobacterium fabrum C58

Subject, 450 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Ralstonia solanacearum GMI1000

 Score =  123 bits (309), Expect = 1e-32
 Identities = 129/433 (29%), Positives = 187/433 (43%), Gaps = 50/433 (11%)

Query: 22  PDGPVYVPFALPGETVAIAKVK-----DQGTVMSITEASADRRDPVCRHFGPEGINGTCG 76
           P   V+V  ALPGE V     +     +Q T++ I   SA R  P CR FG      TCG
Sbjct: 29  PGKVVFVEGALPGERVTYRSHRAKPSYEQATLVDILRQSASRVTPQCRFFG------TCG 82

Query: 77  GCSLQHLADQPYHAFKRELVVSAL-RSKGLTPPVDDLVICRP--GERRRAVFAAR--KTE 131
           GCS+QHL  +   A K+ ++   L     L P V    I  P  G R RA    R    +
Sbjct: 83  GCSMQHLDSRAQIAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAK 142

Query: 132 KGLLLGFSQANSHHIVAIEECPVTSPGIVSRFDAIRAI--GLSMVANAEPFRITVLETLS 189
            G+L+GF +  S ++  +  C V  P + +    +R +   LS+V       + V + ++
Sbjct: 143 GGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIVQRMPQIEVAVGQDVT 202

Query: 190 GLDISV-EGIKSVNDKQRRTLTETVLAMRGIARVSLSGEILIEPQKP--------IIEFG 240
            L + + E + S ++ + R   +       +      G   + P  P        + EFG
Sbjct: 203 ALVLRILEPLTSADEAELRAFADRHAVQFWL---QPKGPDTVYPFYPLDRALTYTLPEFG 259

Query: 241 -GIPVSPPAGGFTQATKQAEDAMAE--LMLAHVGKSKRIADLFCGSGTFALRLARIG-RV 296
             +P  P    FTQ   Q    +    L L       R+ DLFCG G F L +A  G  V
Sbjct: 260 ITMPFKPT--DFTQVNHQINRVLMSRALKLLDARPGDRLLDLFCGIGNFTLPMATRGCEV 317

Query: 297 HAVEAEDKALKALDFAARNTQGLK-PVSVEKRDLFRRPL-MTSELKNYDAVVFDPPRAGA 354
             +E  + AL     A     GL    +   R+LF       + L  +D  + DPPR GA
Sbjct: 318 MGIEGSE-ALTTRALANAQHNGLDGKTTFACRNLFEVSADDIAALGRFDRWLVDPPREGA 376

Query: 355 EVQCKELARSTVK----------KIVAVSCNPLTLARDLAILT-EGGYRVTRVTPVDQFL 403
               K +A  + +          +IV VSCNP TLARD  +L  E GYR+     V+ F 
Sbjct: 377 LAVSKAVAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGYRLAGAGVVNMFP 436

Query: 404 WSPHVEAVAVLEK 416
            + HVE++AV E+
Sbjct: 437 HTSHVESIAVFER 449