Pairwise Alignments

Query, 416 a.a., RNA methyltransferase from Agrobacterium fabrum C58

Subject, 438 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pantoea sp. MT58

 Score =  117 bits (293), Expect = 7e-31
 Identities = 123/453 (27%), Positives = 189/453 (41%), Gaps = 74/453 (16%)

Query: 5   TVTIKSLGAQGDGIAHCPDGPVYVPFALPGETVAIAKVKD-----QGTVMSITEASADRR 59
           TVTI+ L   G G+A      ++V  ALPGE   I   +D     +  V  +   S  R 
Sbjct: 18  TVTIEELDPFGQGVARHKGKTLFVAGALPGEQAEIVLTEDKRQFARAKVTRLISRSPARV 77

Query: 60  DPVCRHFGPEGINGTCGGCSLQHLADQPYHAFKRELVVSALRSKGLTP--PVDDLVICRP 117
            P C H+        CGGC  QH AD       +   +S + S+  +    VD+++  +P
Sbjct: 78  TPRCPHY------DRCGGCQQQH-ADVALQQQSKAQALSRMLSQAASQSVAVDEVIAGQP 130

Query: 118 -GERRRAVFAARKTEKG--LLLGFSQANSHHIVAIEECPVTSPGI----------VSRFD 164
            G RRRA    +   K   L +GF Q  S+ +V I+ CPV  P +          +S   
Sbjct: 131 WGYRRRARLGLQWQNKAQRLQMGFRQEASNDLVDIQHCPVLVPELEALLVPLHQCLSDLR 190

Query: 165 AIRAIGLSMVANAEPFRITVLETLSGLDI-SVEGIKSVNDKQRRTL-----TETVLAMRG 218
           A+R +G   +  A+   + +L  L  L     E ++  + K +  L      E + A+  
Sbjct: 191 AVRRLGHVELVLADNGPLMILRHLDALHTDDREKLEQFSHKHQLMLFLDAGDENLTALSE 250

Query: 219 IARVSLSGEILI--EPQKPIIEFGGIPVSPPAGGFTQATKQAEDAMAELMLAHVGKSKRI 276
                 S ++ +   PQ  I    G+     A        Q ED              R+
Sbjct: 251 SMPFYHSHQLKLTFNPQDFIQVNDGVNQQMVAKAIAWLDLQPED--------------RV 296

Query: 277 ADLFCGSGTFAL-------------RLARIGRVHAVEAEDKALKALDFAARNTQGLKPVS 323
            DLFCG G F L              +A + R  A  A+   LK + F   N +      
Sbjct: 297 LDLFCGMGNFTLPVGIFVQNVVGVEGIAALVRQAAYNADLNNLKNVSFFQHNLE------ 350

Query: 324 VEKRDLFRRPLMTSELKNYDAVVFDPPRAGAEVQCKELARSTVKKIVAVSCNPLTLARDL 383
               ++ R+P  T   + ++ V+ DP RAGA      + +   +++V VSCNP TLARD 
Sbjct: 351 ---EEVSRQPWAT---QGFNKVLLDPARAGAAGVMAHVVKLAPERVVYVSCNPTTLARDS 404

Query: 384 AILTEGGYRVTRVTPVDQFLWSPHVEAVAVLEK 416
            IL   GY++ RV  +D F  + H+E++ +  K
Sbjct: 405 QILLSAGYQLERVAMLDMFPHTRHLESMVLFRK 437