Pairwise Alignments

Query, 416 a.a., RNA methyltransferase from Agrobacterium fabrum C58

Subject, 468 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 99.4 bits (246), Expect = 2e-25
 Identities = 121/462 (26%), Positives = 189/462 (40%), Gaps = 65/462 (14%)

Query: 3   TQTVTIKSLGAQGDGIAHCPDGPVYVPFALPGETV-----AIAKVKDQGTVMSITEASAD 57
           T  VT+ +L   G  +       ++V   LPG+ +      + K   +   +++   +AD
Sbjct: 9   TLDVTVDALAPGGKAVCRHEGRVIFVDRGLPGQQLHVRLTTVRKRFAEAECLAVVTHTAD 68

Query: 58  RRDPVCRHFGPEGINGTCGGCSLQHLADQPYHAFKRELVVSALRSKGLTPPVDDLVIC-- 115
             DP C HFG       CGGC+ Q+L      A+K   V  +L+  G     + L     
Sbjct: 69  ECDPFCPHFGD------CGGCTWQNLPYPAQLAWKERFVRDSLQRIGRIEAPNVLPTLPS 122

Query: 116 --RPGERRRAVFAARKTEKGLL-LGFSQANSHHIVAIEECPV----TSPGIVSRFDAIRA 168
             + G R +  FA    ++ +L LG  +   H +V +  C +    T   + +  D  RA
Sbjct: 123 PLQQGFRNKMEFAFTTDDREMLHLGLRRRGGHEVVDVTSCGLQTATTCRVVTTARDIARA 182

Query: 169 IGL---SMVANAEPFRITVL-ETLSGLDISVEGIKSVNDKQRRTLTETVLAMR------- 217
            GL      A+   +R  V+ E   G    V+ I + + +          A+R       
Sbjct: 183 SGLPGWDDAAHRGFWRFLVVREPARGGQCLVQCITAPHPEAEHVARAFFTALRQAVPEVT 242

Query: 218 ---------------GIARVSLSGEILIEPQKPIIEFGGIPVSPPAGGFTQATKQAEDAM 262
                          G A V   GEI++  +      G I +      F Q   +A + +
Sbjct: 243 GCVHSIRSQNSQVAYGDATVFTEGEIVLTEK-----LGAIELDFGHDTFLQTNTRATELL 297

Query: 263 AELMLAHVGKSKR--IADLFCGSGTFALRLAR-IGRVHAVEAEDKALKALDFAARNTQGL 319
              +    G S R  + DL+CG G+ AL LA     +  +EA   +++A   A RN Q  
Sbjct: 298 YGEVERMAGLSGREHVWDLYCGVGSIALWLAEHAATICGMEATPASVEA---AQRNAQAA 354

Query: 320 KPVSVEKRDLFRRPLMTSELKNY------DAVVFDPPRAGAEVQCKE-LARSTVKKIVAV 372
                +      R L+ S  K        D VV DPPRAG      + L ++   +IV V
Sbjct: 355 GCTHCDFVAGDVRALLRSRSKGKAQEPIPDVVVTDPPRAGMHPDVIDALLQTAPARIVYV 414

Query: 373 SCNPLTLARDLAILTEGGYRVTRVTPVDQFLWSPHVEAVAVL 414
           SC+P T+ARD+ +L +  Y +    PVD F  +PHVE V +L
Sbjct: 415 SCDPATMARDVGLLMQ-RYTLHEARPVDLFPHTPHVETVVLL 455