Pairwise Alignments

Query, 594 a.a., acyl-CoA dehydrogenase from Agrobacterium fabrum C58

Subject, 585 a.a., Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) from Shewanella oneidensis MR-1

 Score =  404 bits (1038), Expect = e-117
 Identities = 250/598 (41%), Positives = 338/598 (56%), Gaps = 33/598 (5%)

Query: 2   YSAPVDDIAFTLKHVAGLEDALSQGVLGDLSE----DLVDAILEEAGRFATGEVAPLADI 57
           Y AP+ D+ F L+ V    +  SQ  L D++E    D  +AILEEA + +   + PL   
Sbjct: 4   YQAPLADMRFLLEQVFDAPNTWSQ--LPDIAEMVDMDTANAILEEAAKISAQLIHPLNRA 61

Query: 58  GDRQGAKLADGKVTTPDGWADLYRRWAEAGWNSLTAPEEFGGQNLPHMLNVAALEMWNSG 117
           GD QG    D  V TP+G+  +Y ++++ GW  L    EFGG  +P ML V   EM  S 
Sbjct: 62  GDEQGVLHQDNCVITPEGYKAVYDQYSQGGWVGLCGEPEFGGMGMPKMLGVLVDEMAYSA 121

Query: 118 SMAFALAPTLTMGAVEAIVTHGSNDLKRIYLPKLVSGEWTGTMNLTEPHAGSDLGVLKTR 177
             AF L  +LT GA   I  HGS  LK+ YLPKL SGEW G M++TEP AGSDL  ++TR
Sbjct: 122 CNAFTLYGSLTAGAALCINAHGSEVLKQAYLPKLYSGEWAGAMDMTEPQAGSDLRNIRTR 181

Query: 178 AERNGDGTYRIFGQKIFITWGEHDAADNIIHLVLARLPDAPTGTRGISLFLVPKFLPDEN 237
           A    DG+Y I G KIFIT G+HD  +N+IHLVLA+LP+    ++GISLFLVPK   +++
Sbjct: 182 AVPQEDGSYAISGSKIFITGGDHDLTENVIHLVLAKLPE----SKGISLFLVPKITVNKD 237

Query: 238 GAPGSRNDLFCHSLEHKLGIHGSPTCTMIFGDGKFGDEKGALGWLIGEENKGLACMFTMM 297
           G  G  N +   S+EHK+G+ GS TC M F + K        G+LIGE N+GL CMFTMM
Sbjct: 238 GCLGGTNGVSVGSIEHKMGLKGSATCVMNFDEAK--------GYLIGEPNRGLVCMFTMM 289

Query: 298 NNARLAVGMQGVAICEAATQKAIEYAKERTQGKAPGWQ--GSGMSPIIEHPDIARTLLTM 355
           N  RLA+G+QG+   +AA Q A +YAKER+QG A G    GS   PII H D+ R LLT+
Sbjct: 290 NYERLAIGIQGLGSAQAAYQMATDYAKERSQGVAAGGSPTGSDSDPIIVHGDVRRMLLTI 349

Query: 356 KALTQGSRAISFSCAHAIDMAHATEDASQRAHWQERAALLTPIAKSFSTDAGVDVASMGI 415
           +A+T+  RA+S      +D+A   +D   +A       LLTP+AK+F TD G+D   M  
Sbjct: 350 RAMTEAGRALSVFTGKQLDLAKYAQD-DVKAKAARYVGLLTPVAKAFLTDRGLDATIMAQ 408

Query: 416 QVHGGMGFIEETGAARYLRDARIAPIYEGTNGIQAIDLVLRKLPLSEGAQVRGFIAELRE 475
           QV GG G+I ETG  + +RD RIA IYEGTNGIQAID + RK+     A ++ F+AEL+ 
Sbjct: 409 QVFGGHGYIRETGVEQLVRDTRIAQIYEGTNGIQAIDFLGRKVTGDNLATLKEFVAELKA 468

Query: 476 IAARTAASNRDDLGETARYLEASLNDLETTTDWLLSRIKAGETETALAGATAYQRL--FG 533
                   +   +      L+A +N  E+  +  L       T+ AL  A A   L  FG
Sbjct: 469 QMREFTQVDGVKIAAVCARLDALVNVAESVNEQKL-------TQPALINACAVDFLDAFG 521

Query: 534 LALTGAY---LAKGALVSVDDGRSGHRAALCRFTAENLLAETAALKDRVISGAASLAA 588
            ++ G Y   +      + D   +  +A L +F  + LL +      +V +G  S  A
Sbjct: 522 YSVYGFYWLAMLDKVPSAEDQNFAEQKAYLAKFYFDKLLPKADYHLAQVRAGDVSTMA 579