Pairwise Alignments

Query, 239 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 235 a.a., Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) from Pseudomonas fluorescens FW300-N2E2

 Score = 47.4 bits (111), Expect = 3e-10
 Identities = 59/204 (28%), Positives = 87/204 (42%), Gaps = 32/204 (15%)

Query: 36  AEILLFNGRDGEWKAKLSFPSRKKISLVPLEQTRPQPDAAE-LHYLFAPLKVGRM----D 90
           A++L    R+ E +  L  P   K+ L  L    P+P     +    A + V R+     
Sbjct: 51  AQVLRLEAREAELQVTLDQPPPAKLPLT-LVLALPRPKMLRRVFQTIATMGVPRVVLVNS 109

Query: 91  YLVQKAVEMGAGLLQPVMTQHVQGKIHNSEKLRANAIEAAEQCGILSLPEVAEPVKLKEM 150
           Y V+K+       L+P             E +R   I   EQ     LPE+     +++ 
Sbjct: 110 YRVEKSFWQ-TPFLEP-------------EAIREQLILGLEQARDSVLPEII----IEKR 151

Query: 151 LETWPEDRRIIYCDE-----GDAGQNPLPILQAVKERKIALLVGPEGGFSEEERALLRSL 205
            + + EDR     D+     G  G  P P  +A+ E  + L +GPEGG+   E  LL   
Sbjct: 152 FKPFVEDRLPAMADDTLGLVGHPGNYP-PCPRALTE-PVTLAIGPEGGWIPYEIELL-GK 208

Query: 206 AFVTPIPLGPRILRADTAAVAALA 229
           A + P+ LG RILR +TA  A LA
Sbjct: 209 AGLQPVQLGERILRVETAVTALLA 232