Pairwise Alignments

Query, 774 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

 Score =  845 bits (2183), Expect = 0.0
 Identities = 449/772 (58%), Positives = 557/772 (72%), Gaps = 18/772 (2%)

Query: 12  IASEINARPDQVKAAVALLDEGATVPFIARYRKEVTGGLDDTQLRTLAERLVYLRELNAR 71
           IA E+N RP+QV AAV L+D+G TVPFIARYRKEVTGGLDDTQLR L  RL YLRE++ R
Sbjct: 9   IAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLAYLREMDDR 68

Query: 72  RASIVDSITGQGKMTDELMVKIMQAGTKAELEDLYLPYKPKRRTRAEIARERGLGPLAEA 131
           R +I+ SI  QGK+T EL   I+ A +K  LEDLYLPYKPKRRT+ +IA E GL PLA+ 
Sbjct: 69  RQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEAGLEPLADT 128

Query: 132 IWENRAADPAKLAEAYVKGE--VADVKAALEGARDIVAETMTENADLLGRLRDYMRRNAT 189
           +W     DP   A  Y+  E  VAD KAAL+GAR IV E + E+A+LL ++R ++ RNA 
Sbjct: 129 LWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIRQHLNRNAE 188

Query: 190 FRAKVVDGKQATGEKFSDYFDHSERWATVPGHRALAMLRGWNEEVLTLTIDVDADDPSPV 249
             ++V++GK+  GEKF DYFDH E  +  P HRALAMLRG NE  LTLT++ D +     
Sbjct: 189 IVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNADPELEESA 248

Query: 250 KPS--QRTIAAAFDIR-SAGPADQWLMEVAGWTWRVKLSMSLSLDLMRELRERAEEEAIN 306
           + S  +  IA  + I  S   AD W  +V  W W++K+SM +  +LM  ++ERAE EAI 
Sbjct: 249 RQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKERAEIEAIE 308

Query: 307 VFARNLKDLLLAAPAGSRATMGLDPGIRTGVKVAIVDGTGKLLDTSTVYPFPPKNDVRGT 366
           VFA NLKDLL+AAPAG RAT+GLDPG+RTG KVA+VD TGK+L T T+YP  P++     
Sbjct: 309 VFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHAPQHQYDRA 368

Query: 367 QAELASLIRKHNVELIAIGNGTGSRETEKLVADLLAQLPASASGAKPTKVIVSEAGASVY 426
              +A L++K NV+LIAIGNGT SRET+   ADL+ +        K  K++VSEAGASVY
Sbjct: 369 MQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKR-----GNLKVQKIMVSEAGASVY 423

Query: 427 SASERAAAEFPNLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQGRLSRSL 486
           SASE AA EFPNLDVSLRGAVSIARRLQDPLAELVKI+PKSIGVGQYQHDV Q  L++ L
Sbjct: 424 SASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLLAKRL 483

Query: 487 DAVVEDAVNAVGVDLNTASSPLLARVSGLGSSIADAIVAHRDQTGPFASRKELLKVPRLG 546
           DA+VED VNAVGVD+NTAS+ LL RV+GL +++A  IV +RD+ G F SR  L KVPRLG
Sbjct: 484 DAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKVPRLG 543

Query: 547 QRTFEQCAGFLRIPNGKEPLDSSSVHPEAYGVAKKIVAACGRDLRSLMGDSAALKALDPK 606
            + FEQCAGFLRI +GK PLD+S+VHPEAY V K I     +DL++L+G++  L+ L   
Sbjct: 544 PKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRTLRAV 603

Query: 607 RFIDEQFGLPTVKDIIAELEKPGRDPRPSFKTATFADGVDEITDLKPGMLLEGTVTNVAA 666
            + DE FG+PTV DII EL+KPGRDPRP FKTATFA+G+ E++DL+ GM+LEG V+NVA 
Sbjct: 604 DYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVAN 663

Query: 667 FGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVEVDVKRKRIGLTMRKDG 726
           FGAFVDIGVHQDGLVH+S L DRF+ DP EVVKAGD+VKV+V+EVDV+RKRI L+MR + 
Sbjct: 664 FGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMRLN- 722

Query: 727 GEAVPQPMREKNNAGAMRHATAKPKERNE------GSQSGGALAAALAEAMK 772
            +   Q  R + +A        +   R+E      G   GGA AAA A+A K
Sbjct: 723 -DEPGQDNRSQRSAAPRSGQERRAPRRDEPQGNALGGAMGGAFAAAFAKAKK 773