Pairwise Alignments

Query, 774 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 556 a.a., 30S ribosomal protein S1 from Vibrio cholerae E7946 ATCC 55056

 Score = 60.5 bits (145), Expect = 2e-13
 Identities = 32/82 (39%), Positives = 54/82 (65%), Gaps = 2/82 (2%)

Query: 646 DEITD-LKPGMLLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVV 704
           DE+ + L+ G  ++G V N+  +GAFVD+G   DGL+H++ +A + VK P E+V  GD +
Sbjct: 183 DELLETLQEGTEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEI 241

Query: 705 KVRVVEVDVKRKRIGLTMRKDG 726
            V+V++ D  R R+ L +++ G
Sbjct: 242 LVKVLKFDRDRTRVSLGLKQLG 263



 Score = 53.9 bits (128), Expect = 2e-11
 Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 3/73 (4%)

Query: 654 GMLLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKD--PHEVVKAGDVVKVRVVEV 711
           G  L G VTN+  +G FV+I    +GLVHVS++ D   K+  P +VV  GD V+V V+++
Sbjct: 277 GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEM-DWTNKNIHPSKVVNVGDEVEVMVLDI 335

Query: 712 DVKRKRIGLTMRK 724
           D +R+RI L +++
Sbjct: 336 DEERRRISLGLKQ 348



 Score = 37.0 bits (84), Expect = 3e-06
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 654 GMLLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFV-KDPHEVVKAGDVVKVRVVEVD 712
           G  + G + ++  FG F+ +    DGLVH+S ++     ++     K GD +   V+ VD
Sbjct: 364 GDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVD 423

Query: 713 VKRKRIGLTMRK 724
            +R+RI L +++
Sbjct: 424 AERERISLGIKQ 435