Pairwise Alignments

Query, 1275 a.a., two component sensor kinase from Agrobacterium fabrum C58

Subject, 1239 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  185 bits (470), Expect = 2e-50
 Identities = 142/507 (28%), Positives = 243/507 (47%), Gaps = 53/507 (10%)

Query: 781  ETLDQMPVA-LLVHAGDRLIHANPDFLRLTGYTS-LTELEEVGG----------LEALLQ 828
            + ++Q+PVA LL +AG R+  AN    +L G T+ L   E V            L  L +
Sbjct: 360  QLIEQLPVATLLCNAGGRIELANQSAAQLFGSTAELLAGERVSRYVPGVLGEQILRQLRE 419

Query: 829  RQELENMPDNEGGMVVVSAENDIIPVKARLQSIRWEETKALMLSLVPLEEKPAAVMAANE 888
              +LE     E G          IPV   L S   ++    +L+L+ L+ +         
Sbjct: 420  TSQLELQAQREDGRP--------IPVAVSLTSFNHDDALYYVLNLLDLQAR--------- 462

Query: 889  NTAENAEAGSNLSLLQGEMEELHSILETATDGVVLLGDDGEIRSLNRSASALFNYDNGEI 948
                           + + E   +++E + +  VL+   G+I  +NR    LF Y   E+
Sbjct: 463  ---------------KRDEERFRNVVEASPNAFVLVDVHGDIVMVNRQTEVLFGYTRQEL 507

Query: 949  AGKPFVTLFAHESQRAVLDYLSGLANNGVASVLNDGREVIGREASGGFLPLFMTIGRLKS 1008
             G+P   L     + A      G   +     +   RE+ G    G  LP+ + +  L+S
Sbjct: 508  LGQPVEQLLPEALREAHRGLRQGYTEHPEPRRMGSNRELFGLHRDGSALPVEIGLSPLRS 567

Query: 1009 SHGYC--AVIRDITQWKRTEEELRNAKRAAETANAHKTDFLARVSHEIRTPLNAIIGFSD 1066
                   AVI DI+  K  E  LR        AN +K++FLA +SHE+RTPLN+I+  SD
Sbjct: 568  GDEQLVQAVIIDISHRKAAERRLREQADQLAVANRYKSEFLANMSHELRTPLNSILILSD 627

Query: 1067 MMATERFGPIGNPRYVEYANDIGRSGRHVLDIVNDLLDISKIEAGQMDVDFIAVPLNETV 1126
             +     G + N + V +A+ I R+G  +L ++ND+LD++KIE+G M +    + L E +
Sbjct: 628  QLRQNGAGNL-NEKQVRHADIIHRAGHELLQLINDVLDLAKIESGHMQLKLEPLNLREML 686

Query: 1127 AEAVSLVQPQANNQRVIIRTALAQSVP-QIVADLRSIKQIVLNILSNAIRFTPSGG-QIV 1184
             E  + + P A  + ++++  +   VP  + +D   ++QI+ N+L+NA++FT  G  +++
Sbjct: 687  TEQQTSLGPMAEQKGLLLKIEVDADVPVTLNSDRARLQQILRNLLTNALKFTEQGEVELL 746

Query: 1185 VSTAYEANGS---VSLRIRDTGIGMTRAELEQAMKPFRQVASSGKRVRGDGTGLGLPLTK 1241
             S     +GS   + L++RD+GIG+ + + E+  + F+Q+  S  R  G GTGLGL +T+
Sbjct: 747  ASCRSAEDGSGQTLQLQVRDSGIGIAKDQHERIFQAFQQIDGSISRHYG-GTGLGLAITR 805

Query: 1242 AMVDANRANFSITSTPNEGTLVEITFP 1268
             +V+      ++ S   +G    +  P
Sbjct: 806  QLVEVLGGQVTVESELGQGATFTVVLP 832



 Score = 27.7 bits (60), Expect = 0.007
 Identities = 36/157 (22%), Positives = 59/157 (37%), Gaps = 20/157 (12%)

Query: 888  ENTAENAEAGSNLSL-LQGEMEELHSILETATDGVVLLGDDGEIRSLNRSASALFNYDNG 946
            E    N++A   LSL LQ        ++E      +L    G I   N+SA+ LF     
Sbjct: 338  ERALRNSQA---LSLQLQEREARFRQLIEQLPVATLLCNAGGRIELANQSAAQLFGSTAE 394

Query: 947  EIAGKPFVTLFAHESQRAVLDYLSGLANNGVASVLNDGR--EVIGREASGGFLPLFMTIG 1004
             +AG+             V  Y+ G+    +   L +    E+  +   G  +P+ +++ 
Sbjct: 395  LLAGE------------RVSRYVPGVLGEQILRQLRETSQLELQAQREDGRPIPVAVSLT 442

Query: 1005 RLKSSHG--YCAVIRDITQWKRTEEELRNAKRAAETA 1039
                     Y   + D+   KR EE  RN   A+  A
Sbjct: 443  SFNHDDALYYVLNLLDLQARKRDEERFRNVVEASPNA 479