Pairwise Alignments

Query, 526 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

Subject, 255 a.a., ABC transporter permease from Methanococcus maripaludis S2

 Score = 63.9 bits (154), Expect = 6e-15
 Identities = 50/218 (22%), Positives = 99/218 (45%), Gaps = 18/218 (8%)

Query: 35  ILLGLTAATTA-----FFGIVCAWLVTTFEFPLRRILSAALVLPLAIPSYLAAYAFGEFL 89
           +L+ + AA TA     F GI  ++L+  + F  + ++ A + +P+AIP  +       F 
Sbjct: 49  LLVSIKAAGTATVLAIFLGIPLSYLLARYHFTGKNVVEAIIDIPMAIPHSVIGIMILAF- 107

Query: 90  DFTGPVQSAVRAAFGYHSIRDYWFPDIRSLGGAVIVLSSVLYPYVYLSARAALSMQGRFA 149
            F G          G+  + ++W        G V+V+  V  PY+  S R    M     
Sbjct: 108 -FYGTSIGRGIEDIGFEIVDNFW--------GIVVVMLYVGLPYMVNSGRDGFLMVEEEL 158

Query: 150 AEAARTLGAKPLNVFFSVQLPMARPAIAIGLSLVLMETLNDIGAVEYLGV--QTLTFTIY 207
              +RTLGA  +  FF++ LP+ +  +  G  L     ++++GA+  +    +T    I 
Sbjct: 159 ENVSRTLGASKIKTFFNISLPLIKNNLVSGSILTFARGISEVGAILIVAYFPKTTPVLIL 218

Query: 208 ETWLNRGNLANATQIAAVILIIVSALIVIERNAREKQR 245
           + + N   L+++  I+ +++++   L  + R  R  ++
Sbjct: 219 DRF-NEYGLSSSKPISVIMIVLSIILFSVFRLVRYNKK 255



 Score = 40.0 bits (92), Expect = 1e-07
 Identities = 47/241 (19%), Positives = 99/241 (41%), Gaps = 20/241 (8%)

Query: 273 LFCFLPVASGFFIPVIVLGGYAAKRLDALFQPKLLKALGHSLEVSLSAAFLTLIAAFVFS 332
           LF  LP+ +    P  V G +           +++K+L  S++ + +A  L +      S
Sbjct: 20  LFVLLPLLNMILNPGNVAGAFN--------DSEVIKSLLVSIKAAGTATVLAIFLGIPLS 71

Query: 333 YAIRTERSRLSKVAARLGSMGYGVPGTVLAIGVLIPL--ASLDNGVDGFIRSHFGFSSGL 390
           Y +         V   +  +   +P +V+ I +L      S+  G++       GF    
Sbjct: 72  YLLARYHFTGKNVVEAIIDIPMAIPHSVIGIMILAFFYGTSIGRGIEDI-----GFEIVD 126

Query: 391 LLSGTAFAIIYAHAVRFMTMAEGTLDAGFHKLSPHIDMASRSLGRNRAQTLFKVLLPNMR 450
              G    ++Y   V    M     D GF  +   ++  SR+LG ++ +T F + LP ++
Sbjct: 127 NFWGIVVVMLY---VGLPYMVNSGRD-GFLMVEEELENVSRTLGASKIKTFFNISLPLIK 182

Query: 451 PAALTAFLLVLIESMKELPATILLRPFGFNTLATLVYEDASRSRVQDAAVPAIIIIMAGL 510
              ++  +L     + E+ A +++  F   T   L+ +  +   +  +   ++I+I+  +
Sbjct: 183 NNLVSGSILTFARGISEVGAILIVAYFP-KTTPVLILDRFNEYGLSSSKPISVIMIVLSI 241

Query: 511 I 511
           I
Sbjct: 242 I 242