Pairwise Alignments

Query, 526 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

Subject, 589 a.a., spermidine/putrescine ABC transporter permease from Klebsiella michiganensis M5al

 Score = 94.4 bits (233), Expect = 1e-23
 Identities = 116/524 (22%), Positives = 213/524 (40%), Gaps = 54/524 (10%)

Query: 28  RAGFRTFILLGLTAATTAFFGIVCAWLVTTFEFPLRRILSAALVLPLAIPSYLAAYAFGE 87
           ++GF   +  GL A      GI+ A+L+   + P RR +   +++P+ +   +  + +  
Sbjct: 67  KSGF--ILAFGLVAIAIPLGGIL-AFLMVRTDLPGRRFIEPLILVPIFVSPMVLGFGYVV 123

Query: 88  FLDFTGPVQSAVRAAFGYHSIRDYWFPDIRSLGGAVIVLSSVLYPYVYLSARAALSMQGR 147
                G          G+      W  +I S+   V++      P+ YL   +AL   G 
Sbjct: 124 AAGPVGFFSQWAEQLIGFVP----W--NIYSMFSIVVIAGLTHVPHAYLYISSALRSVGS 177

Query: 148 FAAEAARTLGAKPLNVFFSVQLPMARPAIAIGLSLVLMETLNDIGAVEYL----GVQTLT 203
              EAART+GA PL V  +V LPM RP+I     L+    L   G +  L    G   L 
Sbjct: 178 DVEEAARTVGASPLQVMTAVSLPMVRPSILYACVLLFFLGLEVFGLMLVLGDPEGNMVLA 237

Query: 204 FTIYETWLNRGNLAN--ATQIAAVILIIVSALIVIERN-AREKQRFGAPKATSMAQRHRL 260
             +Y+     G  +      +A V++ I   L++++R   R   RF   K    A + R 
Sbjct: 238 TYLYKLTNKLGTPSYHLMAAVAVVLICITIPLVMLQRRLMRTANRFVTMK--GKASQARA 295

Query: 261 KALAGWRRWCASLFCFLPVASGFFIPVIVLG--------GYAAKRLDALF---------Q 303
             L  W RW A +     +     +P++ +         G      D L          Q
Sbjct: 296 LPLGKW-RWVAGIVVVAWLTVTIGVPLLGVALRAFISNWGVGVSLWDELSLATFRSIWQQ 354

Query: 304 PKLLKALGHSLEVSLSAAFLTLIAAFVFSYAIRTERSRLSKVAARLGSMGYGVPGTVLAI 363
           P LL+A+ +S+ + +    L ++       A+  +   +++       +   VPG +  +
Sbjct: 355 PNLLRAIVNSMAIGVFGGALAVVCYLFVGIAMHRKPDNVTRFLDYSVLVPRAVPGLLAGL 414

Query: 364 GVL-----IPL---ASLDNG------VDGFIRSHFGFSSGLLLSGTAFAIIYAHAVRFMT 409
             L     +P+    SL NG      V  ++R H        L  T F++  A+ V +M 
Sbjct: 415 AFLWVFLFLPMWLDQSLKNGWLSALPVADWLREHL-IVQLRALRNTIFSVWLAYTVVWMA 473

Query: 410 MAEGTLDAGFHKLSPHIDMASRSLGRNRAQTLFKVLLPNMRPAALTAFLLVLIESMKELP 469
                + +   +++P ++ A+RS G +R Q    V +P  R   + ++LL+ +   +E  
Sbjct: 474 YGLRLISSTLLQVAPELEEAARSTGASRGQITRHVTVPLSRYGLIGSWLLMFLIFEREYS 533

Query: 470 ATILLRPFGFNTLATLVYEDASRSRVQDAAVPA---IIIIMAGL 510
             + L   G  T+ +++    +   +   A  +   I++++ GL
Sbjct: 534 TGVYLLSPGTETIGSMLVSLWAAGAIDIVAALSFINILLVVVGL 577