Pairwise Alignments

Query, 270 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

Subject, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

 Score =  224 bits (571), Expect = 1e-63
 Identities = 106/244 (43%), Positives = 170/244 (69%), Gaps = 1/244 (0%)

Query: 11  LTLGFAFLYIPIIILIIYSFNASKLVTVWGGFSLQWYKSMWSNQGLMDAAWVTLRVGILS 70
           ++L + FLY+PII+LI  SFN +K    WGGF+ +WY ++ +N  LM AAW ++ V + S
Sbjct: 10  MSLVYLFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAWHSINVAVFS 69

Query: 71  ATIGTILGTLAALSLTRFARFPGRVLFSGMIYAPLVMPEVITGLSLLLLFVAVGVDRGFW 130
           AT  T++G+L A++L R+ +F G+ + SGM++  ++ P+++  +SLL LF+ +G   GF+
Sbjct: 70  ATAATLIGSLTAVALFRY-QFKGKKVVSGMLFVVMMSPDIVMAISLLALFLVMGAKLGFF 128

Query: 131 TVVIAHTTFTMCYVAIVVQSRLLTFDRSLEEAALDLGCPPVKTFFRITLPLIFPAVIAGW 190
           T++IAH TF + +V + V +RL  FD  + EAA DLG        +I LPL  PAV AGW
Sbjct: 129 TLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKKIILPLAKPAVAAGW 188

Query: 191 MLAFTLSLDDLVIASFATGPGATTLPIKIYSQVRLGVTPEINAICTILIGLVTIGVIAAS 250
           +L+FTLSLDD++I+SF TGP    LP+KIYS V++G++PE+NA+ T+++ +  + V+A+ 
Sbjct: 189 LLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALATVMLVVSLVLVVASQ 248

Query: 251 VASK 254
           + ++
Sbjct: 249 LLAR 252