Pairwise Alignments

Query, 365 a.a., ABC transporter, substrate binding protein (putrescine) from Agrobacterium fabrum C58

Subject, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  207 bits (526), Expect = 4e-58
 Identities = 113/332 (34%), Positives = 187/332 (56%), Gaps = 19/332 (5%)

Query: 1   MKNRSLRLTLALTTALVAAGSAMAQEKVVHVYNWSDYIDPVILEDFTKETGIKVVYDVYD 60
           MKN+      AL  A +   +AMA+++ ++ YNWS+YI   +LEDFTKETGIKV+Y  Y+
Sbjct: 1   MKNKLF--ASALCAAALFTTNAMAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYE 58

Query: 61  GNEVLETKLLAGSSGYDVVAPTSPFLARQIKAGVYQKLDKSKLPNLKNAWPDITERLAKY 120
            NE +  KL    +GYD+V P++ F+++  K G+ Q++D SKL + K+  P+   +   +
Sbjct: 59  SNESMYAKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLNK--PF 116

Query: 121 DPGNEYAVNYMWGTTGIGYNVAKVKAALGDVPVDSWDVLFKPENAEKLKSCGINILDASD 180
           DPGN++++ Y+WG TGIG N       L    + +W  L+  + A +L      ++D + 
Sbjct: 117 DPGNKFSIPYIWGATGIGINT----DMLDKKSLKNWGDLWDAKWAGQLM-----LMDDAR 167

Query: 181 ETFAIAMNYLGKNPDSKETADLEAGGEVYSKIRPYVKTFNSSPYINDLANGDTCISIGWS 240
           E F IA++ LG +P++    +++A      K+ P V  FNS    N    G+  + + W+
Sbjct: 168 EVFHIALSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWN 227

Query: 241 GDILQAKTRAEEAKNGVEVNYVIPKEGTYIWMDSFAIPADAKNVDEAHAFINYMMKPEVA 300
           G    A+      + G  +  + P++GT  WMDS +IPA AKN++ AH  I+++++PE A
Sbjct: 228 GSAYMAR------QEGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENA 281

Query: 301 AKASDYVQYANGNLPSQALMDPSVAKNPGVYP 332
           AK +  + Y      +  L+    A +P +YP
Sbjct: 282 AKIALEIGYPTPVKTAHDLLPKEFANDPSIYP 313