Pairwise Alignments

Query, 290 a.a., flagellar motor protein from Agrobacterium fabrum C58

Subject, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

 Score = 50.1 bits (118), Expect = 5e-11
 Identities = 52/267 (19%), Positives = 114/267 (42%), Gaps = 25/267 (9%)

Query: 4   VIGLIITFGCIIGGYMAMGGHLNVLVQPFELMIIGGAGLGGFIMANPMKVVKDSGKALGE 63
           ++GLI     +I   M +GG + + V    ++I+ G  +   +M   M     + K  G+
Sbjct: 6   LVGLIGGMAFVIMA-MVLGGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAAKIAGK 64

Query: 64  AFKHSVPKERNYLDVLGVLYSLMRDLRTKSRNEIEAHIDNPEESSIFQSAPSVLKNKELT 123
           AF        + +  +  +    R     +  E+E  I NP                   
Sbjct: 65  AFMFKADAPEDLIAKIVEMADAARKGGFLALEEME--IPNP------------------- 103

Query: 124 SFICDYVRLIIIGNARSHEIEALMDEEIETILHDKLKPYHAITTMGDSFPAIGIVAAVLG 183
            F+   + L++ G+  +  + A + ++I        K        GD  PA+G++  ++G
Sbjct: 104 -FMQKGIDLLVDGHD-ADVVRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVG 161

Query: 184 VIKAMGKINESPEVLGGLIGAALVGTMLGIILSYSICNPLASQVKIVRTKQHRLYIIVKQ 243
           ++  +  +++ P+ +G  +  AL+ T+ G +LS  I  P+A ++ + R ++     ++  
Sbjct: 162 LVAMLSNMDD-PKSIGPAMAVALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMD 220

Query: 244 TLIAYMNGSVPQVALEYGRKTISNYER 270
            ++A  +G  P+V   Y +  ++  +R
Sbjct: 221 GVLAIQDGQNPRVIDSYLKNYLNASKR 247