Pairwise Alignments

Query, 290 a.a., flagellar motor protein from Agrobacterium fabrum C58

Subject, 281 a.a., flagellar motor protein MotA (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  191 bits (486), Expect = 1e-53
 Identities = 107/284 (37%), Positives = 173/284 (60%), Gaps = 9/284 (3%)

Query: 1   MNIVIGLIITFGCIIGGYMAMGGHLNVLVQPFELMIIGGAGLGGFIMANPMK----VVKD 56
           M  +IGL++ FG I+ GY+   G L+VL QP EL+II GA +G FI+++       V+K+
Sbjct: 1   MFAIIGLVVVFGSILTGYLMSHGVLHVLWQPAELIIILGAAIGAFIVSSTKYSLGLVLKN 60

Query: 57  SGKALGEAFKHSVPKERNYLDVLGVLYSLMRDLRTKSRNEIEAHIDNPEESSIFQSAPSV 116
               LG+        +  YLDVLG+L SL   +  +    IE  I+ PE SSIF   P++
Sbjct: 61  LKLVLGDPGM----SKAKYLDVLGLLNSLFVKMHREGVISIEQDIEKPEGSSIFNKYPAI 116

Query: 117 LKNKELTSFICDYVRLIIIGNARSHEIEALMDEEIETILHDKLKPYHAITTMGDSFPAIG 176
            K+K    FI D +R + +     +EI++LM+ +++++  ++    H+I  M +S P +G
Sbjct: 117 AKDKHTVHFIGDTLR-VYLTTGDPNEIDSLMEVDMKSMHEEESIAPHSIGRMAESLPGMG 175

Query: 177 IVAAVLGVIKAMGKINESPEVLGGLIGAALVGTMLGIILSYSICNPLASQVKIVRTKQHR 236
           IVAAVLGV+  MGKI+E PEVLG  IGAAL+GT +GI+  Y +  P+ ++++    + H 
Sbjct: 176 IVAAVLGVVLTMGKISEPPEVLGHHIGAALIGTFIGILFCYGVFGPMGAKIEQANHEHHM 235

Query: 237 LYIIVKQTLIAYMNGSVPQVALEYGRKTISNYERPSIDAVEQEM 280
            + ++K+ + A + GS P +A+EYGR+ I +  RP+   +E+++
Sbjct: 236 YFAVIKEAVAAAIRGSTPIIAVEYGRRAIPHTFRPTFAEMEEKL 279