Pairwise Alignments

Query, 1169 a.a., two component sensor kinase/response regulator hybrid from Agrobacterium fabrum C58

Subject, 565 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  276 bits (706), Expect = 3e-78
 Identities = 173/427 (40%), Positives = 246/427 (57%), Gaps = 22/427 (5%)

Query: 742  PDK-GIVATFT-DITQRVASDQALKQANETLEQRVEERTVELTRVNRALAEARASADEAN 799
            PD+ G+V  F  D+T+R  +   L Q NE LEQRV ERT EL        EAR +A+ AN
Sbjct: 141  PDEDGLVEGFVADVTERKLAQLRLLQLNEELEQRVAERTCELR-------EARDAAEAAN 193

Query: 800  IGKTRFFAAAGHDILQPLNAARLYSSSLVERLGASGESDLVHNIDSALESVETILGAVLD 859
            + K ++ AAA HD+LQPLNAARL  S+L ER     E  LV     ALE  E +L  +LD
Sbjct: 194  LSKDKYLAAASHDLLQPLNAARLLISTLRERQLPQSELHLVERAHLALEGAEDLLTDLLD 253

Query: 860  ISRLDTGSMKARMTSVPLNELLKRIETDFAPMAQEKNLDLVVMPTSLTVRSDPNLLRRLI 919
            IS+LD  ++K  + +  L+++L  + ++F P+A  K L L        +  D  LL R++
Sbjct: 254  ISKLDQAAIKPDIDAYSLDDILLPLISEFQPVAAAKGLQLSHYLPRCAISCDFRLLTRIL 313

Query: 920  QNLVSNAIKYTLEGKVVVGARRRGGEVVIQVTDSGIGIPASKFRTVFKEFARLD-EGAKT 978
            +NL+SNA +YT  G V++GAR+RG  + I+V D+G GIP     ++F EF +L    A  
Sbjct: 314  RNLLSNACRYTDAGGVLLGARKRGDMLRIEVWDTGRGIPEEDLHSIFLEFNQLGVSRAAE 373

Query: 979  ASGLGLGLSIVDRLSRMLHHPVQLISTPGKGTTFRIHLPREADRLAPAKTEGGTTSPAAS 1038
             SG+GLGL+IVDR++ ML + V + S PG+G+ F I +P  A  + P        +P   
Sbjct: 374  RSGVGLGLAIVDRIANMLDYRVLVRSRPGRGSVFSIDVPMAA-TVPPRSAVTPVIAPQLG 432

Query: 1039 DRLHGIRVLCIDNEPKILEGMTLLLTGWGCDVLPA----GSVAALEEPFLTLAAAPDVII 1094
            D L G R+L IDNE  IL  M  LL  WGC V+ A     ++AAL         APD I+
Sbjct: 433  DPLPGRRLLVIDNETSILHSMAALLEQWGCTVVTATDEQTAIAALG------GVAPDAIL 486

Query: 1095 ADYHLDDGD-GISAIRLIRTFYGKTIPALLVTADRSPEVRSDAEKYGISVQHKPVKPAAL 1153
            ADYHLD G  G   +  +R  +   +P +++TADRS + R   +  G+ V +KPVKP  +
Sbjct: 487  ADYHLDHGSTGWDVVLALRARFSTRLPVVMITADRSDQCRRQLQGVGVPVLNKPVKPGKM 546

Query: 1154 RAYINQI 1160
            R+ ++ +
Sbjct: 547  RSVLSHL 553