Pairwise Alignments

Query, 181 a.a., putative RNA polymerase sigma-70 factor from Agrobacterium fabrum C58

Subject, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

 Score = 56.2 bits (134), Expect = 3e-13
 Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 5/166 (3%)

Query: 19  DRNALRVIFEREAGRLIAVAERIVKRRELAEEVVQESFVRIWTHAPQYRADHGSARGWIY 78
           D  A  ++F   + +L     + V   ++A E+VQE+   +W  A  +     S   WIY
Sbjct: 25  DTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKSSLATWIY 84

Query: 79  AIVRNRALNLLR--DGSRELTVQDVETLRDSEQADEV--VAAWQKLDRNSRLYECLGALD 134
            I RN + +LLR   G     + D     D    D V   A  Q L    ++ + L  L 
Sbjct: 85  TIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYAPEQDL-LKEQVMKFLDRLP 143

Query: 135 ETKRQGILMAYVAGYSHGEIAGRLRVPLGTTKSWIRRGLSALRECM 180
           E ++Q I   Y+      ++A  L +PLGT KS +R  +  LR  M
Sbjct: 144 EAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSM 189