Pairwise Alignments

Query, 188 a.a., transcription antitermination protein from Agrobacterium fabrum C58

Subject, 182 a.a., transcription termination/antitermination protein NusG from Vibrio cholerae E7946 ATCC 55056

 Score = 55.1 bits (131), Expect = 7e-13
 Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 27/190 (14%)

Query: 12  KHEWFVVETKHKAEKAVEDALRKAGVKVFLPLETIGETVVRGRIIPAV--------SRPL 63
           K  W+VV+     E  V  +LR+  +K+    E  GE +V    +  +         R  
Sbjct: 6   KKRWYVVQAFSGFEGRVAQSLREH-IKMHGMEELFGEVLVPTEEVVEMRAGQRRKSERKF 64

Query: 64  LPGYVLVNIVYSPAAVCGIARLEGVAGFVGGMV-HPHRVSDEE----MNRFKAFGDDETA 118
            PGYVLV ++ +  +   +  +  V GF+GG    P  ++D+E    +NR +   +   A
Sbjct: 65  FPGYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASE---A 121

Query: 119 PDVKHCEQFKRGDKVRFVLGPFASFGGNILKLRKDRAVDGERVATGAVVAVDVFGKVSTI 178
           P  K    F+ G+ VR   GPFA F G +        VD E+  +   V+V +FG+ + +
Sbjct: 122 PRPK--TMFEAGEVVRVNDGPFADFNGTV------EEVDYEK--SRLKVSVSIFGRATPV 171

Query: 179 EAPLALLEQL 188
           E     +E+L
Sbjct: 172 ELEFGQVEKL 181