Pairwise Alignments

Query, 570 a.a., long-chain-fatty-acid-CoA-ligase from Agrobacterium fabrum C58

Subject, 557 a.a., long-chain-fatty-acid--CoA ligase (RefSeq) from Shewanella loihica PV-4

 Score =  598 bits (1541), Expect = e-175
 Identities = 309/554 (55%), Positives = 406/554 (73%), Gaps = 9/554 (1%)

Query: 18  WLASYPPGVPSEIPASANASLIDLLEKSCKQFADRKAFSSMGKSLTYRELDADTRAVAAW 77
           W  + P  VP+ I A   +SLIDL E S  ++AD+ AF +MG +LTYR+L+  +RA AA+
Sbjct: 5   WTKNLPHDVPAIIDAKQYSSLIDLFESSVAKYADQPAFVNMGATLTYRKLEERSRAFAAY 64

Query: 78  LQSR-GLEKGDRVAVMMPNILQNPVAVYGILRAGMVVVNVNPLYTPRELEHQLKDSGAKA 136
           LQ+   L+KGDRVA+MMPN+LQ P+A++GILRAGMVVVNVNPLYTPREL+HQL DSGAKA
Sbjct: 65  LQNELKLQKGDRVAIMMPNLLQYPIALFGILRAGMVVVNVNPLYTPRELKHQLNDSGAKA 124

Query: 137 LFVLENFAHVAQQAVPKTAVRHVVVAAMGDLLGL-KGHIVNLVVRKVKKLVPAHAIPGSI 195
           + V+ NFA+  +Q V +T V+ V++  +GDLL   K  +VN VV+ +KK+VP + +P +I
Sbjct: 125 IVVVSNFANTLEQVVEQTPVKSVILTGLGDLLSAPKRTLVNFVVKYIKKMVPKYHLPHAI 184

Query: 196 SFKAMLKEGQGVSLKPVGLTAQDIAFLQYTGGTTGVSKGAVLTHANLLANKAQISLWLDA 255
           S +  L +G+ +      +   DIAFLQYTGGTTGVSKGA+LTH N+++N  Q     DA
Sbjct: 185 SMRQSLSKGRRLQYVKPTIKGDDIAFLQYTGGTTGVSKGAMLTHGNIVSNLLQA----DA 240

Query: 256 AFNGR-KDRPEVLNFICALPLYHIFALTVNSLMGIALGGHNLLIANPRDIPGFVKELSHY 314
           A++    D  E +  + ALPLYHIFALTVN L+ +  G +NLLI NPRDIP FV EL  +
Sbjct: 241 AYSPLLADGKEFV--VTALPLYHIFALTVNCLLFLHKGANNLLITNPRDIPAFVSELKKH 298

Query: 315 QPHIFPGLTTLFNALMNNEEFRKLDLSSLIFVLGGGMAVQRPVAERWVSVVGCPITEGYG 374
                 G+ TLFNAL+++EEF+ LD S+L   +GGGMAVQR VA++W  +    + EGYG
Sbjct: 299 PFTALTGVNTLFNALVSSEEFKTLDFSNLKLSIGGGMAVQRAVADKWQGITKTRLLEGYG 358

Query: 375 LSETSPVATVNRLDAAEFSGTIGLPISSTEIDIRDEDGNSLPTGEVGEICIRGPQVMAGY 434
           L+E SP+ T    +   ++G+IG P+++T++ +RDE+GN LP GE GE+  +GPQVM GY
Sbjct: 359 LTEASPLLTCCPYNLEGYNGSIGFPVANTDMQVRDEEGNVLPQGETGELFAKGPQVMKGY 418

Query: 435 WQRPDETAKAITADGFFRSGDMGFMDERGYTKIVDRKKDMILVSGFNVYPNEVEEVAASH 494
           WQRP+ETAK I  DG+  +GD+G+MDE+G+  IVDRKKDMILVSGFNV+PNEVEEV A H
Sbjct: 419 WQRPEETAKVIDKDGYLATGDIGYMDEQGFFFIVDRKKDMILVSGFNVFPNEVEEVVALH 478

Query: 495 PGVLECAAIGVPDEHSGETVKLFVVKKDQSLTEAELKAFCAKNLTNYKRPKIIEFRTDLP 554
           P VLE AA+GVP E SGE VK+FVV KD+SLTE ++   C  +LT YK PK++EFR +LP
Sbjct: 479 PKVLEVAAVGVPHEVSGELVKVFVVPKDKSLTEEQVIKHCRHHLTGYKIPKLVEFRDELP 538

Query: 555 KSNVGKILRRELRN 568
           KSNVGKILRRELR+
Sbjct: 539 KSNVGKILRRELRD 552