Pairwise Alignments

Query, 570 a.a., long-chain-fatty-acid-CoA-ligase from Agrobacterium fabrum C58

Subject, 549 a.a., AMP-binding protein from Methanococcus maripaludis S2

 Score =  225 bits (573), Expect = 4e-63
 Identities = 166/548 (30%), Positives = 266/548 (48%), Gaps = 28/548 (5%)

Query: 35  NASLIDLLEKSCKQFADRKAFSSMGKSL--TYRELDADTRAVAAWLQSRGLEKGDRVAVM 92
           N ++ +  EK  ++  DR+      ++L  TY+E D  T  +A  L   G++KGD + + 
Sbjct: 5   NDTIGEFFEKQAQKDPDREFLVYPDRNLRFTYKEFDERTDLLAKGLLEIGIKKGDHIGIW 64

Query: 93  MPNILQNPVAVYGILRAGMVVVNVNPLYTPRELEHQLKDSGAKALFVLENFAHVAQQAVP 152
             N+      ++   + G+V+V VN  Y   EL + +K S  KAL ++++F  V    + 
Sbjct: 65  ARNVPDWLTFMFATAKIGVVLVTVNTAYKSHELAYVMKQSDMKALAIIDSFRDVNYLEIL 124

Query: 153 KTAVRHVVVAAMGDLLGLKGHIVNLVVRKVKKLVPAHAIPGSISFKAMLKEGQGVSLKPV 212
              V  +  +  G L   +   +  V+      V      G  +   ++  G  VS + +
Sbjct: 125 YELVPELKTSQRGKLNSEEFPYLKNVI-----YVGQEKHRGMYNTTELMLLGNYVSDEKL 179

Query: 213 -----GLTAQDIAFLQYTGGTTGVSKGAVLTHANLLANKAQISLWLDAAFNGRKDRPEVL 267
                GL + D+  +QYT GTTG  KG +LTH N+L N   I         G K +    
Sbjct: 180 IEAKKGLDSDDVINMQYTSGTTGFPKGVMLTHKNILNNGYYI---------GEKQKFTEE 230

Query: 268 NFICA-LPLYHIFALTVNSLMGIALGGHNLLIANPRDIPGFVKELSHYQPHIFPGLTTLF 326
             +C  +PL+H F + +  L  +  GG  L++    D    +  +   +     G+ T+F
Sbjct: 231 ERLCLPVPLFHCFGIVLGVLALLTHGG-TLVMLEIFDPLLVLAAIQKEKCTAVYGVPTMF 289

Query: 327 NALMNNEEFRKLDLSSL-IFVLGGGMAVQRPVAERWVSVVGCPITEGYGLSETSPVATVN 385
            A  ++  F   DLSSL   ++ G       + +    +    IT  YGL+E SPV T+ 
Sbjct: 290 IAEFSHPMFEMFDLSSLRTGIMAGSTCPIEAMKKVMSDMYMREITISYGLTEASPVFTMT 349

Query: 386 RLDAA--EFSGTIGLPISSTEIDIRD-EDGNSLPTGEVGEICIRGPQVMAGYWQRPDETA 442
            +D    +   ++G  +   E+ I D E G +L  G VGEIC RG  VM GY++ P++TA
Sbjct: 350 SVDDPFEKRVESVGKAMPHCEVKIIDPETGETLAPGNVGEICCRGYNVMKGYYKMPEKTA 409

Query: 443 KAITADGFFRSGDMGFMDERGYTKIVDRKKDMILVSGFNVYPNEVEEVAASHPGVLECAA 502
           + I  DG+  SGD+   DE GY KIV R KDMI+  G N+YP E+EE   + PG+ +   
Sbjct: 410 EVIEKDGWLHSGDLAVEDEDGYYKIVGRIKDMIIRGGENIYPREIEEFLYTMPGINDAQV 469

Query: 503 IGVPDEHSGETVKLFVVKKD-QSLTEAELKAFCAKNLTNYKRPKIIEFRTDLPKSNVGKI 561
           +G+PDE  GE V  FV+ K+   + E +++ F  + +  YK PK +    + P +  GKI
Sbjct: 470 VGIPDEKYGEIVGAFVIPKEGYEIKEEDVRDFALEKIARYKVPKHVFVVEEFPMTASGKI 529

Query: 562 LRRELRNL 569
            + +L  L
Sbjct: 530 QKFKLTEL 537