Pairwise Alignments

Query, 266 a.a., tRNA pseudouridine synthase I from Agrobacterium fabrum C58

Subject, 261 a.a., tRNA pseudouridine synthase A (RefSeq) from Shewanella loihica PV-4

 Score =  171 bits (434), Expect = 1e-47
 Identities = 93/247 (37%), Positives = 137/247 (55%), Gaps = 3/247 (1%)

Query: 3   RFRMTVEYDGTPYYGWQRQENGPSVQGALEAAVRSLTGESVSIRGAGRTDSGVHAVGQVA 62
           R  + +EYDG+ Y+GWQRQ    SVQ  LE A+  +  E +SI+ AGRTD+GVHA GQV 
Sbjct: 2   RVALGIEYDGSRYFGWQRQAEVDSVQAQLERALSFVANEPISIQCAGRTDAGVHATGQVV 61

Query: 63  HIDLSRDWEPYKLRNALNAHLAMAGEAVAVLDAAAVTEDFDARFSALRRHYLYRIICRKS 122
           H + +   +       +N +L    + +AV  A  V ++F ARF+A  R Y Y I   + 
Sbjct: 62  HFETNAVRKESAWTLGVNVNLP---DDIAVRWAKDVDDEFHARFTATARRYRYMIYNHQF 118

Query: 123 RLALEHKRAWWVSKDLDHERMHEAAQMLVGRHDFTTFRSVHCQANSPVRTLDRLDVTRNG 182
           R  +           +D  +MHEAAQ L+G  DFT+FR++ CQ+N+P R +  ++VTR G
Sbjct: 119 RPGILRSGVSHYPGQIDEAKMHEAAQFLLGEQDFTSFRAIQCQSNTPFRCVHEVNVTRQG 178

Query: 183 DLIEIRATAQSFLHNQIRSFAGTLKLAGEGGMTPDDVRAALEARDRKACGPVAPPDGLYF 242
             I +   A +FLH+ +R+  G+L   G G      ++  L  +DR      A P+GLY 
Sbjct: 179 MYICVDIKANAFLHHMVRNIVGSLLEVGYGRQPVSWIKELLALKDRTQAAATAKPNGLYL 238

Query: 243 MQVDYPD 249
           + V YP+
Sbjct: 239 VDVTYPE 245