Pairwise Alignments

Query, 410 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 510 a.a., DNA recombination protein RmuC from Vibrio cholerae E7946 ATCC 55056

 Score = 84.0 bits (206), Expect = 1e-20
 Identities = 65/253 (25%), Positives = 129/253 (50%), Gaps = 30/253 (11%)

Query: 98  LNQRLDGMSQRLGETLTEQTRSTH------ENLSRLQERLAVIDAAQGNIQDLAKDVVGL 151
           L ++L+G  +++ ++   + +  H       NL RL E++A             K+ V L
Sbjct: 190 LKEQLEGFKKQVNDSFNHEAKERHTLVHELRNLQRLNEQMA-------------KEAVNL 236

Query: 152 -QAILSNKQTRGAFGQARMETLIADA-LPAG-AFQLQPTLSNG----YRPDCIIKMPNNA 204
            QA+  + + +G +G+  +  ++A++ L  G  +Q Q +L N     Y+PD I+ +P N 
Sbjct: 237 TQALKGDNKQQGNWGEVVLARVLAESGLREGHEYQTQVSLQNEAGKRYQPDVIVHLPQNK 296

Query: 205 PALVIDAKFPLEAWNAIKADETPETKRAAVQQFRRDMEVHIRDVAEK--YLIRG-ETQDT 261
             +VID+K  L A+      ET   + +A+++    +  HIR + +K  + ++G ++ D 
Sbjct: 297 Q-VVIDSKMALVAYERYFHAETDSERDSALREHLLALRNHIRGLGQKDYHQLKGIQSLDY 355

Query: 262 AFIFVPSESIFADIHQHFEYLVQRAHRARVVIVSPSLLMLSVQVIQSVLKDQRMREQAHL 321
             +F+P E  F    Q    LV  A    +++VSP+ L+++++ I ++ +++R  + A L
Sbjct: 356 VLMFIPVEPAFQVAIQADPSLVNDAMEQNIILVSPTTLLVALRTIDNLWRNERQNQNAQL 415

Query: 322 IQGEVALLMDDVR 334
           I    + L D +R
Sbjct: 416 IAERASKLYDKLR 428