Pairwise Alignments

Query, 883 a.a., DNA mismatch repair protein, MutS family from Agrobacterium fabrum C58

Subject, 859 a.a., DNA mismatch repair protein MutS from Pseudomonas stutzeri RCH2

 Score =  580 bits (1494), Expect = e-169
 Identities = 353/882 (40%), Positives = 511/882 (57%), Gaps = 38/882 (4%)

Query: 1   MMEQYIEIKANNPGSLLFYRMGDFYELFFDDAVEASRALGITLTKRGQHMGHDIPMCGVP 60
           MM+QY ++K  +P  L+FYRMGDFYELF+DDA +A+  L ITLT RGQ  G  IPM G+P
Sbjct: 14  MMQQYWKLKREHPDQLMFYRMGDFYELFYDDAKKAAALLDITLTARGQSAGTAIPMAGIP 73

Query: 61  VHAADDYLQKLILRGYRVAVCEQIEDPAEAKKRGSKSVVKRDVVRLVTPGTLTEEKLLSP 120
            H+A+ YL +L+  G  V +CEQI DPA      SK  V+R VVR++TPGT+++E LL  
Sbjct: 74  FHSAEGYLARLVKLGESVVICEQIGDPAT-----SKGPVERQVVRIITPGTVSDEALLDE 128

Query: 121 TESNYLMALARIRGSAEAQFALAWIDISTGVFRLAETT-LTRLLADIWRIDPRELIVADS 179
              N L A+       E  F L+ +DI++G F + E      LLA++ R+ P EL++ D 
Sbjct: 129 RRDNLLAAVV----GDEKLFGLSVLDIASGRFSVQELKGWETLLAELERLSPAELLIPDD 184

Query: 180 LFHDEELRPVFDVLGRVAVPQPAILFDSAVAEGRIARYFNVSTLDGFGTFS-RVEMAAAA 238
                 L     V  R         FD   A   + + F+   L GFG  +  + + AA 
Sbjct: 185 WPQGLPLEKRRGVRRRAPWD-----FDRDSAFKSLCQQFSTQDLKGFGCENLTLAIGAAG 239

Query: 239 AAVAYVEKTQIAERPPLGAPERESAASTLFIDPATRANLELVKTLSGDRDGSLLHALNRT 298
             +AY ++TQ    P L +   E    T+ +D A+R NLEL   L+G R+ +L   ++R 
Sbjct: 240 CLLAYAKETQRTALPHLRSLRHERLDDTVILDGASRRNLELDVNLAGGRENTLQSVMDRC 299

Query: 299 VTGGGARLLAERLMSPLTDPERINARLDAVAYLIDDVSLCDGLRDALKHVADMPRALSRL 358
            T  G+RLL   L  PL + E + AR D++  L++     + L+  LK + D+ R L+R+
Sbjct: 300 QTAMGSRLLTRWLNRPLRNREILEARQDSITCLLEHYRF-EQLQPQLKDIGDLERILARI 358

Query: 359 ALERGGPRDLGAIRQGLVSAEKIAVILDGGLLPDELAKALRDLKALPGALEAMLGSMLAD 418
            L    PRDL  +R  L +  ++   +   + P  L +    +   P   E +L   + D
Sbjct: 359 GLRNARPRDLARLRDALAALPQLQAGMQDLVAP-HLLELATSISTYPELAE-LLARAIID 416

Query: 419 DLPLLKRDGGFLREGANPELDEVRALRDQSRRVIAGLQLQYADETGIKSLKIKHNNVLGY 478
           + P + RDGG L+ G +PELDE+++L + + + +  L+ +    TG+ +LK+ +N V GY
Sbjct: 417 NPPAVIRDGGVLKTGYDPELDELQSLSENAGQYLMDLETREKARTGLANLKVGYNRVHGY 476

Query: 479 FIEVTAGNADVMMATDEAKARFIHRQTMAGAMRFTTTELADLESRIANAAAEALTMELEA 538
           FIE+ +  A+       A A +I RQT+ GA RF T EL + E +  +A + AL  E   
Sbjct: 477 FIELPSKQAE------SAPADYIRRQTLKGAERFITPELKEFEDKALSAKSRALAREKLL 530

Query: 539 FERMVEAVVQQAEAIKAGALALAVIDVASSLAYLATEQAYCRPIVDASMTFSIKGGRHPV 598
           ++ ++E ++     ++  A ALA +DV S+LA  A      RP         I+ GRHPV
Sbjct: 531 YDELLEMLIGHLAPLQESAAALAELDVLSNLAERALNLDLNRPRFVEQPCMRIEQGRHPV 590

Query: 599 VEQALRRQSAGPFIANNCDLSAVNGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIGS 658
           VEQ L      PF+AN+  L          + ++TGPNMGGKST++RQ ALI +LAQIGS
Sbjct: 591 VEQVLET----PFVANDLGLDDAT-----RMLVITGPNMGGKSTYMRQTALIVLLAQIGS 641

Query: 659 FVPAEAAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVILDEIGRG 718
           FVPA A  + +VDR+F+R+G+SDDLA GRSTFMVEM ETA IL+ A+DRSLV++DE+GRG
Sbjct: 642 FVPAAACELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDRSLVLMDEVGRG 701

Query: 719 TATFDGLSIAWAAVEHLHEVNRCRGLFATHFHELTVLSEKLGRLSNATMRVKEWEGDVIF 778
           T+TFDGLS+AWAA EHL ++ R   LFATH+ ELTVL E    ++N  +   E    ++F
Sbjct: 702 TSTFDGLSLAWAAAEHLAKL-RAFTLFATHYFELTVLPESEPVVANVHLSATEHNERIVF 760

Query: 779 LHEVGPGAADRSYGIQVARLAGLPASVVERAREVLTKLEDADRKNPASQLIDDLPLFQIA 838
           LH V PG A +SYG+ VA+LAG+P  V++RAR+ L++LE     + A ++    P     
Sbjct: 761 LHHVLPGPASQSYGLAVAQLAGVPGEVIQRARDHLSRLETTSLAHEAPRIAPGQP---AP 817

Query: 839 VRREETRKAGPSKVEEALKSFNPDEMTPREALDALYALKKEL 880
             + +   + P  V E L   NPD++TPR+ALD LY+LK  +
Sbjct: 818 PMQSDLFASLPHPVLEELGRINPDDVTPRQALDLLYSLKSRI 859