Pairwise Alignments

Query, 883 a.a., DNA mismatch repair protein, MutS family from Agrobacterium fabrum C58

Subject, 862 a.a., DNA mismatch repair protein MutS from Vibrio cholerae E7946 ATCC 55056

 Score =  575 bits (1482), Expect = e-168
 Identities = 352/885 (39%), Positives = 511/885 (57%), Gaps = 45/885 (5%)

Query: 1   MMEQYIEIKANNPGSLLFYRMGDFYELFFDDAVEASRALGITLTKRGQHMGHDIPMCGVP 60
           MM+QY+ +KA NP  LLFYRMGDFYELF+DDA  AS  L I+LTKRG   G  IPM GVP
Sbjct: 18  MMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGEPIPMAGVP 77

Query: 61  VHAADDYLQKLILRGYRVAVCEQIEDPAEAKKRGSKSVVKRDVVRLVTPGTLTEEKLLSP 120
            HA + YL KL+  G  VA+CEQI DPA      SK  V+R VVR+VTPGT+T+E LLS 
Sbjct: 78  FHAVEGYLAKLVQMGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTVTDEALLSE 132

Query: 121 TESNYLMALARIRGSAEAQFALAWIDISTGVFRLAET-TLTRLLADIWRIDPRELIVADS 179
              N + A+    G    +F  A +DI++G F+L+E  T   + A++ R  PREL+    
Sbjct: 133 RVDNLIAAIYHHNG----RFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELLFP-- 186

Query: 180 LFHDEELRPVFDVLGRVAVPQ-PAILFDSAVAEGRIARYFNVSTLDGFGTF-SRVEMAAA 237
               E+  PV  +  R    + P   F+   A+ ++ + F    L GFG   +++ + AA
Sbjct: 187 ----EDFSPVHLMASRQGNRRRPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGLCAA 242

Query: 238 AAAVAYVEKTQIAERPPLGAPERESAASTLFIDPATRANLELVKTLSGDRDGSLLHALNR 297
              + YV+ TQ    P + +   +    ++ +D ATR NLEL   L+G  D +L   L+ 
Sbjct: 243 GCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEVLDH 302

Query: 298 TVTGGGARLLAERLMSPLTDPERINARLDAVAYLIDDVSLCDGLRDALKHVADMPRALSR 357
             T  G+R+L   +  P+ D   +N RLDA+  L  + +L   L   LK + D+ R L+R
Sbjct: 303 CATPMGSRMLKRWIHQPMRDNATLNQRLDAITEL-KETALYGELHPVLKQIGDIERILAR 361

Query: 358 LALERGGPRDLGAIRQGLVSAEKIAVILDGGLLPD--ELAKALRDLKALPGALEAMLGSM 415
           LAL    PRDL  +R  +    ++  ++     P   EL      +  L   LE  +   
Sbjct: 362 LALRSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAI--- 418

Query: 416 LADDLPLLKRDGGFLREGANPELDEVRALRDQSRRVIAGLQLQYADETGIKSLKIKHNNV 475
             ++ P++ RDGG + +G + ELDE R L + +   +  L+ +  D  GI +LK+ +NNV
Sbjct: 419 -KENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNV 477

Query: 476 LGYFIEVTAGNADVMMATDEAKARFIHRQTMAGAMRFTTTELADLESRIANAAAEALTME 535
            G++I+V+ G + ++         ++ RQT+  A R+   EL   E ++ N+ + AL +E
Sbjct: 478 HGFYIQVSRGQSHLV------PPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALE 531

Query: 536 LEAFERMVEAVVQQAEAIKAGALALAVIDVASSLAYLATEQAYCRPIVDASMTFSIKGGR 595
            + +E + + ++   E ++  A ++A +DV  +LA  A    YCRP +       I+GGR
Sbjct: 532 KQLWEELFDLLMPHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQGGR 591

Query: 596 HPVVEQALRRQSAGPFIANNCDLSAVNGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQ 655
           HPVVE+ +      PFIAN  +L+         + ++TGPNMGGKST++RQ ALIA++A 
Sbjct: 592 HPVVERVMNE----PFIANPIELNPQR-----RMLIITGPNMGGKSTYMRQTALIALMAH 642

Query: 656 IGSFVPAEAAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVILDEI 715
           IGS+VPAE+A IG +DR+F+R+GASDDLA GRSTFMVEM ETA IL+ AT  SLV++DEI
Sbjct: 643 IGSYVPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEI 702

Query: 716 GRGTATFDGLSIAWAAVEHLHEVNRCRGLFATHFHELTVLSEKLGRLSNATMRVKEWEGD 775
           GRGT+T+DGLS+AWA+ E L +      LFATH+ ELT L   L  L+N  +   E    
Sbjct: 703 GRGTSTYDGLSLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDG 762

Query: 776 VIFLHEVGPGAADRSYGIQVARLAGLPASVVERAREVLTKLEDADRKNPASQLIDDLPLF 835
           + F+H V  GAA +SYG+ VA LAG+P  V++ AR  L +LE       +SQ  +     
Sbjct: 763 IAFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARAKLQQLELL-----SSQPAETRKPS 817

Query: 836 QIAVRREETRKAGPSKVEEALKSFNPDEMTPREALDALYALKKEL 880
           ++ +  + +    PS VE+AL   +PD++TPR+ALD LY LKK L
Sbjct: 818 RVDIANQLSLIPEPSAVEQALAGVDPDQLTPRQALDMLYQLKKLL 862