Pairwise Alignments

Query, 883 a.a., DNA mismatch repair protein, MutS family from Agrobacterium fabrum C58

Subject, 929 a.a., MutS 1 protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  918 bits (2373), Expect = 0.0
 Identities = 507/886 (57%), Positives = 620/886 (69%), Gaps = 25/886 (2%)

Query: 1   MMEQYIEIKANNPGSLLFYRMGDFYELFFDDAVEASRALGITLTKRGQHMGHDIPMCGVP 60
           MM QY+ +KA +P  LLFYRMGDFYE+FF+DAV+A+  L I LTKRG+H G DIPMCGVP
Sbjct: 54  MMAQYLAVKAAHPDCLLFYRMGDFYEMFFEDAVKAAETLDIALTKRGRHAGADIPMCGVP 113

Query: 61  VHAADDYLQKLILRGYRVAVCEQIEDPAEAKK-RGSKSVVKRDVVRLVTPGTLTEEKLLS 119
           +H+ + YL +LI  G +VA+CEQ+EDPAEA++ RG K+VV+RDV+R+VT GTLTE++LL 
Sbjct: 114 IHSHEGYLSRLIRAGIKVAICEQMEDPAEARRQRGYKAVVRRDVIRVVTAGTLTEDELLD 173

Query: 120 PTESNYLMALARIRGSAEAQFALAWIDISTGVF---RLAETTLTRLLADIWRIDPRELIV 176
               NYL A+ R+R +      +AW+D+STG      LAE  +   LA   R+ P E+++
Sbjct: 174 ARAHNYLAAVVRLRDAV----GMAWVDVSTGDLVAQPLAEADIGPALA---RLAPGEVLM 226

Query: 177 ADSLFHDEELRPVFDVLGRVAVPQPAILFDSAVAEGRIARYFNVSTLDGFGTFSRVEMAA 236
            + L  D  LR +   L     P PA  FDS  A  R+   F V  LDGFG F R E+AA
Sbjct: 227 PEKLAGDPALREILAPLAGRISPLPASRFDSENARKRVEGLFGVKALDGFGGFGRAEVAA 286

Query: 237 AAAAVAYVEKTQIAERPPLGAPERESAASTLFIDPATRANLELVKTLSGDRDGSLLHALN 296
             A + YVE TQ+   P L  P R S  + L ID ATR NLEL +TL G R GSLL  ++
Sbjct: 287 IGALIDYVELTQVGRLPRLSPPRRLSLGAILEIDGATRRNLELTETLGGGRKGSLLARID 346

Query: 297 RTVTGGGARLLAERLMSPLTDPERINARLDAVAYLIDDVSLCDGLRDALKHVADMPRALS 356
            TVTG GARLLAERL +PLTDP +I ARLD V +L+    +   LRD L+   D+ RALS
Sbjct: 347 CTVTGAGARLLAERLAAPLTDPAQIGARLDGVGFLVSAERVRGDLRDTLRGCPDIARALS 406

Query: 357 RLALERGGPRDLGAIRQGLVSAEKIAVILDGGLL---PDELAKALRDLKALPGALEAMLG 413
           RL+L RGGPRDL AI + L     + V++ G  L   P EL  AL DL +  G ++ +LG
Sbjct: 407 RLSLGRGGPRDLAAIGEALSRIPALRVLVVGAGLGEPPTELTAALIDLGSHEGLVD-LLG 465

Query: 414 SMLADDLPLLKRDGGFLREGANPELDEVRALRDQSRRVIAGLQLQYADETGIKSLKIKHN 473
             L  DLPLL RDGGF+R G +  LDE+RALRD+ RR+IAGLQ +YA ET I +LKIKHN
Sbjct: 466 RALDADLPLLARDGGFIRPGYDAGLDELRALRDEGRRLIAGLQARYASETAIPALKIKHN 525

Query: 474 NVLGYFIEVTAGNADVMMATDEAKARFIHRQTMAGAMRFTTTELADLESRIANAAAEALT 533
           NVLGYFIEV AG AD +MA   A   F+HRQT+A  +RFTT EL++LE +I  AA +AL 
Sbjct: 526 NVLGYFIEVAAGRADKLMA---AGGPFLHRQTLASQVRFTTVELSELEDKIRGAADKALA 582

Query: 534 MELEAFERMVEAVVQQAEAIKAGALALAVIDVASSLAYLATEQAYCRPIVDASMTFSIKG 593
           +E   F  +   V+  A  I   A  LA +DVA++LA LA  + Y RP+VD S  F I  
Sbjct: 583 LEQALFATLCAEVLGCAADIARAANGLACLDVAAALADLAARERYARPVVDNSTAFRIHK 642

Query: 594 GRHPVVEQALRRQSAGPFIANNCDLSAVNGGKNGAIWLLTGPNMGGKSTFLRQNALIAIL 653
           GRHPVVE AL  Q+   F+AN+CDL+      +  +WLLTGPNM GKSTFLRQNALIA+L
Sbjct: 643 GRHPVVEAALADQAGPAFVANDCDLAP-----DQRLWLLTGPNMAGKSTFLRQNALIAVL 697

Query: 654 AQIGSFVPAEAAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVILD 713
           AQ+GSFVPAE+A IGV+DRLFSRVGA+DDLARGRSTFMVEMVETAAILNQAT+RSLVILD
Sbjct: 698 AQMGSFVPAESAEIGVIDRLFSRVGAADDLARGRSTFMVEMVETAAILNQATERSLVILD 757

Query: 714 EIGRGTATFDGLSIAWAAVEHLHEVNRCRGLFATHFHELTVLSEKLGRLSNATMRVKEWE 773
           EIGRGTAT+DGLSIAWA VE LH+  RCR LFATH+HELT L+ +L RLS  T+R+KEW+
Sbjct: 758 EIGRGTATYDGLSIAWATVESLHDATRCRALFATHYHELTALASRLDRLSCHTLRIKEWK 817

Query: 774 GDVIFLHEVGPGAADRSYGIQVARLAGLPASVVERAREVLTKLEDADRKNPASQLIDDLP 833
             V+FLHEVGPGAADRSYGI VA+LAGLPA+V+ RA +VL  LE  D  + A++L DDLP
Sbjct: 818 DQVVFLHEVGPGAADRSYGIHVAKLAGLPAAVIARAEQVLAILEKGDASSAATRLADDLP 877

Query: 834 LFQIAVRRE--ETRKAGPSKVEEALKSFNPDEMTPREALDALYALK 877
           LF  A  R    T   GP  + EAL + NPDEMTPREALDALY LK
Sbjct: 878 LFAAARPRAGLPTPPPGPHPLAEALNAINPDEMTPREALDALYRLK 923