Pairwise Alignments

Query, 883 a.a., DNA mismatch repair protein, MutS family from Agrobacterium fabrum C58

Subject, 894 a.a., DNA mismatch repair protein MutS from Herbaspirillum seropedicae SmR1

 Score =  538 bits (1385), Expect = e-157
 Identities = 350/905 (38%), Positives = 497/905 (54%), Gaps = 55/905 (6%)

Query: 1   MMEQYIEIKANNPGSLLFYRMGDFYELFFDDAVEASRALGITLTKRGQHMGHDIPMCGVP 60
           MM+QY+ IKA++P +L+FYRMGDFYELFF+DA +ASR +G+TLT+RG   G  I M GVP
Sbjct: 11  MMQQYLRIKADHPNTLVFYRMGDFYELFFEDAEKASRLMGVTLTQRGSSNGTPIKMAGVP 70

Query: 61  VHAADDYLQKLILRGYRVAVCEQIEDPAEAKKRGSKSVVKRDVVRLVTPGTLTEEKLLSP 120
            H+ + YL +LI  G  VA+CEQI DPA      SK  V+R VVR+VTPGTLT+  LL  
Sbjct: 71  FHSVEQYLARLIKLGESVAICEQIGDPAT-----SKGPVERKVVRVVTPGTLTDSDLLPE 125

Query: 121 TESNYLMALARI--RGSAEAQFALAWIDISTGVFRLAETTLTRLLAD------IWRIDPR 172
                L+A+  +  +   + Q  L+W+ +++G  ++ E T+   L D      + RI   
Sbjct: 126 KAERCLLAMQLVPSKSRKQMQVGLSWLSMASGALKMMEFTVEAALLDGRVKQELERISAA 185

Query: 173 ELIVADSLFHDEELRPVFDVLGRVAVPQPAILFDSAVAEGRIARYFNVSTLDGFGTFSR- 231
           E++VAD      +L     +L   AV  P   FD   +E  +     V+TL GFG     
Sbjct: 186 EVLVADG-----QLEWCEPLLPNRAVTVPDWHFDQPSSEKALLDQLGVATLHGFGADGLG 240

Query: 232 VEMAAAAAAVAYVEKTQIAERPPLGAPERESAASTLFIDPATRANLELVKTLSGDRDGSL 291
             + AA A + Y + TQ      +     ES    + +D ATR NLEL +T+      +L
Sbjct: 241 PAICAAGALLRYAQSTQGRGLQHVRTLTVESENEFIGLDAATRRNLELTETIRSQDANAL 300

Query: 292 LHALNRTV----TGGGARLLAERLMSPLTDPERINARLDAVAYLIDDVSLCDGLRDALKH 347
              L  T+    T  G+RLL   L   L D +   AR  A+  L+     C GL   L  
Sbjct: 301 APTLFSTLDHCRTAMGSRLLRHWLHHALRDQQVARARHAAINALMR-TDACSGLSATLAA 359

Query: 348 VADMPRALSRLALERGGPRDLGAIRQGLVSAEKIAVILD--GGLLPDELAKALRDLKALP 405
           V D+ R  +R+AL    PRDL  +R GL     +   ++  G      L   L +  A P
Sbjct: 360 VPDIERITTRIALLSARPRDLAGLRAGLQQLGSLRAYVEMCGRDADASLLTQLHEDLATP 419

Query: 406 GALEAMLGSMLADDLPLLKRDGGFLREGANPELDEVRALRDQSRRVIAGLQLQYADETGI 465
                +L   +  +   + RDGG +  G + ELDE+R L + + + +  L+ +  + TGI
Sbjct: 420 VECLDLLERAIMLEPAAMVRDGGVIARGFDAELDELRGLSENAGQYLLDLEARERERTGI 479

Query: 466 KSLKIKHNNVLGYFIEVTAGNADVMMATDEAKARFIHRQTMAGAMRFTTTELADLESRIA 525
            +L++++N V G++IEVT G       TD+    +  RQT+  A R+   EL   E +  
Sbjct: 480 ANLRVEYNKVHGFYIEVTHGQ------TDKVPEDYRRRQTLKNAERYIIPELKAFEDKAL 533

Query: 526 NAAAEALTMELEAFERMVEAVVQQAEAIKAGALALAVIDVASSLAYLATEQAYCRPIVDA 585
           +A   +L+ E   +E+++  +      ++A A ALA +D   +LA  A    +C P +  
Sbjct: 534 SAQERSLSREKFLYEQLLGDMGAHIVRLQAIAHALAQLDTLVALADHAVRNNWCAPQLVD 593

Query: 586 SMTFSIKGGRHPVVEQALRRQSAGPFIANNCDLSAVNGGKNGAIWLLTGPNMGGKSTFLR 645
                I+ GRHPVVE  + R     FIAN+C L+A        + L+TGPNMGGKS F+R
Sbjct: 594 EPCIQIEQGRHPVVENQIER-----FIANDCQLAAER-----RLLLITGPNMGGKSIFMR 643

Query: 646 QNALIAILAQIGSFVPAEAAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQAT 705
           Q ALI +LA +GSFVPA +A IG VDR+F+R+GA+DDLA GRSTFMVEM E+AAILN AT
Sbjct: 644 QVALITLLAYVGSFVPATSAVIGPVDRIFTRIGAADDLAGGRSTFMVEMTESAAILNNAT 703

Query: 706 DRSLVILDEIGRGTATFDGLSIAWAAVEHLHEVNRCRGLFATHFHELTVLSEKLGRLSNA 765
           + SLV++DE+GRGT+TFDGL++AWA  +HL +V R   LFATH+ ELT L E     +N 
Sbjct: 704 EHSLVLMDEVGRGTSTFDGLALAWAIAKHLIDVTRSFTLFATHYFELTQLPEIHPTAANV 763

Query: 766 TMRVKEWEGDVIFLHEVGPGAADRSYGIQVARLAGLPASVVERAREVLTKLEDADRKNPA 825
            +   E +  ++FLH V  G A +SYG+QVA+LAG+PA V+  AR+ L+ LE    +   
Sbjct: 764 HLSAVEHKDSIVFLHAVQSGPASQSYGLQVAQLAGVPAQVIRAARKHLSALESQSMQATP 823

Query: 826 SQLIDDLPLFQI---------AVRREETRKAGPSKVEEA----LKSFNPDEMTPREALDA 872
              +   P F           A  R E+    P  + +A    L   +PD +TPR+AL+A
Sbjct: 824 QFDLFSAPAFATPGTQDEPDPADERSESDAVEPDPLAQALLQTLAQIDPDALTPRQALEA 883

Query: 873 LYALK 877
           LY LK
Sbjct: 884 LYQLK 888