Pairwise Alignments

Query, 883 a.a., DNA mismatch repair protein, MutS family from Agrobacterium fabrum C58

Subject, 862 a.a., DNA mismatch repair protein mutS (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  505 bits (1300), Expect = e-147
 Identities = 317/891 (35%), Positives = 503/891 (56%), Gaps = 47/891 (5%)

Query: 1   MMEQYIEIKANNPGSLLFYRMGDFYELFFDDAVEASRALGITLTKRGQHMGHDIPMCGVP 60
           MM+Q++++KA +P +++ +R GDFYE +  DA+ AS  LGITLTKR    G  I M G P
Sbjct: 1   MMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKTIEMAGFP 60

Query: 61  VHAADDYLQKLILRGYRVAVCEQIEDPAEAKKRGSKSVVKRDVVRLVTPGTLTEEKLLSP 120
            HA D YL KLI  G RVA+C+Q+EDP   KK     +VKR +  LVTPG    + +L+ 
Sbjct: 61  HHALDTYLPKLIRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVSINDNVLNY 115

Query: 121 TESNYLMALARIRGSAEAQFALAWIDISTGVFRLAETTLTRLLADIWRIDPRELIV--AD 178
            E+N+L A+       +A   +A++DISTG F  AE     +   +    P+E++     
Sbjct: 116 KENNFLAAV----HFGKASCGVAFLDISTGEFLTAEGPFDYVDKLLNNFGPKEILFERGK 171

Query: 179 SLFHDEELRPVFDVLGRVAVPQPAILFDSAVAEGRIARYFNVSTLDGFGT-FSRVEMAAA 237
            L  +      F             +F  + A  ++ ++F    L GFG    +  + A+
Sbjct: 172 RLMFEGNFGSKF-----FTFELDDWVFTESTAREKLLKHFETKNLKGFGVEHLKNGIIAS 226

Query: 238 AAAVAYVEKTQIAERPPLGAPERESAASTLFIDPATRANLELVKTLSGDRDGSLLHALNR 297
            A + Y+  TQ  +   + +  R      + +D  T  +LEL+ +++ D   SLL+ ++R
Sbjct: 227 GAILQYLTMTQHTQIGHITSLARIEEDKYVRLDKFTVRSLELIGSMN-DGGSSLLNVIDR 285

Query: 298 TVTGGGARLLAERLMSPLTDPERINARLDAVAYLIDDVSLCDGLRDALKHVADMPRALSR 357
           T++  GARLL   ++ PL D + IN RL+ V Y        + + + L  + D+ R +S+
Sbjct: 286 TISPMGARLLKRWMVFPLKDEKPINDRLNVVEYFFRQPDFKELIEEQLHLIGDLERIISK 345

Query: 358 LALERGGPRDLGAIRQGLVSAEKIAVILDGGLLPDELA-KALRDLKALPGALEAMLGSML 416
           +A+ R  PR++  ++   V+ + I  I    L  D  +   + +   L  ++   +   +
Sbjct: 346 VAVGRVSPREVVQLK---VALQAIEPIKQACLEADNASLNRIGEQLNLCISIRDRIAKEI 402

Query: 417 ADDLPLLKRDGGFLREGANPELDEVRALRDQSRRVIAGLQLQYADETGIKSLKIKHNNVL 476
            +D PLL   GG +++G N ELDE+R +    +  +  +Q + +++TGI SLK+ +NNV 
Sbjct: 403 NNDPPLLINKGGVIKDGVNEELDELRRISYSGKDYLLQIQQRESEQTGIPSLKVAYNNVF 462

Query: 477 GYFIEVTAGNADVMMATDEAKARFIHRQTMAGAMRFTTTELADLESRIANAAAEALTMEL 536
           GY+IEV        +  D+    +I +QT+  A R+ T EL   E +I  A  + L +E 
Sbjct: 463 GYYIEVR------NIHKDKVPQEWIRKQTLVNAERYITQELKVYEEKILGAEDKILVLET 516

Query: 537 EAFERMVEAVVQQAEAIKAGALALAVIDVASSLAYLATEQAYCRPIVDASMTFSIKGGRH 596
           + +  +V+A+ +    I+  A  +A +D   S A +A E  Y RP+++ +    I+ GRH
Sbjct: 517 QLYTDLVQALTEFIPQIQINANQIARLDCLLSFANVARENNYIRPVIEDNDVLDIRQGRH 576

Query: 597 PVVEQALRRQSAGPFIANNCDLSAVNGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQI 656
           PV+E+ L       +IAN+  L +     +  I ++TGPNM GKS  LRQ ALI +LAQI
Sbjct: 577 PVIEKQL--PIGEKYIANDVMLDSA----SQQIIIITGPNMAGKSALLRQTALITLLAQI 630

Query: 657 GSFVPAEAAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVILDEIG 716
           GSFVPAE+AHIG+VD++F+RVGASD+++ G STFMVEM E A ILN  + RSLV+ DE+G
Sbjct: 631 GSFVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNVSSRSLVLFDELG 690

Query: 717 RGTATFDGLSIAWAAVEHLHE--VNRCRGLFATHFHELTVLSEKLGRLSNATMRVKEWEG 774
           RGT+T+DG+SIAWA VE++HE    + R LFATH+HEL  + +   R+ N  + VKE + 
Sbjct: 691 RGTSTYDGISIAWAIVEYIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDN 750

Query: 775 DVIFLHEVGPGAADRSYGIQVARLAGLPASVVERAREVLTKLEDADRKNPASQLIDDLPL 834
            VIFL ++  G ++ S+GI VA++AG+P S+V+RA  +L +LE  +R+    Q I   PL
Sbjct: 751 KVIFLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANTILKQLESDNRQ----QGISGKPL 806

Query: 835 FQIAVRREETRKA-----GP--SKVEEALKSFNPDEMTPREALDALYALKK 878
            +++  R   + +      P   ++ + + + + + +TP EAL+ L  +KK
Sbjct: 807 TEVSENRSGMQLSFFQLDDPILCQIRDEILNLDVNNLTPIEALNKLNDIKK 857