Pairwise Alignments

Query, 514 a.a., RNA polymerase sigma-54 factor from Agrobacterium fabrum C58

Subject, 489 a.a., RNA polymerase sigma-54 factor RpoN from Pseudomonas fluorescens FW300-N2E2

 Score =  290 bits (741), Expect = 1e-82
 Identities = 185/506 (36%), Positives = 284/506 (56%), Gaps = 36/506 (7%)

Query: 13  QSLVMTPQLMQSIQLLQMTHFELTQFIAQEVERNPLLEIAANDGDLGSDTPV--DVDNFG 70
           Q L MTPQL Q+I+LLQ++  +L Q I + +E NP+LE      D  +  P+  +V+   
Sbjct: 3   QQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNTDPLADNVEQKT 62

Query: 71  DAEASDAAVRVTPDS-----DDWYGERAANLGEQLDTSFENVFPDDGEPRKADAPELASQ 125
           + E  +   + T  +     D  + ER  N    +DT++E+V+                 
Sbjct: 63  NTEIPEPTYQETAPTVDNLEDGEWNERIPN-ELPVDTAWEDVYQTSAS------------ 109

Query: 126 WKSMPGQESGESYDLDDFVAARQSLSDHLNQQLPLAISAAEDRMIADALIGQLDETGYIA 185
             S+P  +  E +D     +A +SL  HL  QL LA  +  DR+IA  LI  ++  GY+ 
Sbjct: 110 --SLPSSDDDE-WDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCINNQGYLD 166

Query: 186 ADAVDDVAE----RLGATPSAVEYVLKTLQGFDPPGIFSRSLSECLATQLAQKDRLDP-- 239
            + ++++ E     L      +E VL  +Q F+P GI +R+L ECL  QL Q     P  
Sbjct: 167 -ETLEEILEAFDPELDIELDEIEAVLHRIQQFEPAGIGARNLGECLLLQLRQLSAKTPWL 225

Query: 240 --AMRAFVDNLELLAKRDFASLKKLCGVDEEDLLDMLAEIRTLNPRPGAGYDSMVSETIV 297
             A R   D ++LL  RD++ L +   + E++L  ++  +++LNPRPG+  +S   E +V
Sbjct: 226 AEAKRLVTDYIDLLGGRDYSQLMRRMKLKEDELRQVIELVQSLNPRPGSQIESTEPEYVV 285

Query: 298 PDIIVRPSSTGGWLVEINPDTLPRVLINQSYFAEVSKHKARAGEDQDFLSECMQTAHWLT 357
           PD+IVR  +   WLVE+N +++P++ +N  Y   V +  A    D  F+   +Q A W  
Sbjct: 286 PDVIVRKHNDR-WLVELNQESVPKLRVNAQYAGFVKR--ADTSADNTFMRNQLQEARWFI 342

Query: 358 RSLDQRARTIMKVASEIVRQQDAFLINGVDQLRPLNLKTVADAIKMHESTVSRVTSKKYM 417
           +SL  R  T+MKVA++IV  Q  FL  G + ++PL L  +A+A+ MHEST+SRVT++K+M
Sbjct: 343 KSLQSRNETLMKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFM 402

Query: 418 LTPRGLFELKYFFSVSISAVEGGDSHSAEAVRHRIKAMIAQEAAEAVLSDDDIVDNLKKT 477
            TPRG++ELKYFFS  +S  EGG+  S+ A+R  IK ++A E  +  LSD  I   L+  
Sbjct: 403 HTPRGIYELKYFFSSHVSTSEGGEC-SSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQ 461

Query: 478 GIDIARRTVAKYREAMNIPSSVQRRR 503
           GI +ARRTVAKYRE++ I  S +R+R
Sbjct: 462 GIQVARRTVAKYRESLGIAPSSERKR 487