Pairwise Alignments

Query, 514 a.a., RNA polymerase sigma-54 factor from Agrobacterium fabrum C58

Subject, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

 Score =  274 bits (701), Expect = 5e-78
 Identities = 182/512 (35%), Positives = 275/512 (53%), Gaps = 38/512 (7%)

Query: 3   LSASLLLRQNQSLVMTPQLMQSIQLLQMTHFELTQFIAQEVERNPLLEIAANDGDLGSDT 62
           +  SL L+  Q L MTPQL Q+I+LLQ++  +L Q I + +E NPLLE+  N  +  S  
Sbjct: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLD 60

Query: 63  PVDVDNFGDAEASDAAVRVTPDSDDWYGERAANLGEQLDTSFENVFPDD----GEPRKAD 118
            V +      E  +       DS D   +   +   ++DT+++ V+  +    G     D
Sbjct: 61  SVRMTEESPREPEELYEPEPQDSSDLIEKSEISAELEMDTTWDEVYSANTGSTGLALDDD 120

Query: 119 APELASQWKSMPGQESGESYDLDDFVAARQSLSDHLNQQLPLAISAAEDRMIADALIGQL 178
           AP    +                      Q+L D+L+ QL L   +  DR IA ALI  +
Sbjct: 121 APIYQGE--------------------TTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAI 160

Query: 179 DETGYIAADAVDDVAERLGATP---SAVEYVLKTLQGFDPPGIFSRSLSECLATQLA--- 232
           D+ GY+   +++++ E L +       +E V K +Q FDP G+ S +L +CL  QL    
Sbjct: 161 DDYGYLTV-SLEEIQESLRSDDIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYP 219

Query: 233 -QKDRLDPAMRAFVDNLELLAKRDFASLKKLCGVDEEDLLDMLAEIRTLNPRPGAGYDSM 291
                L+ A       ++ L  RD+ ++ K   + EEDL ++L  I+ L+PRPG+     
Sbjct: 220 CDTPWLEEARLLLSQYIDDLGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQD 279

Query: 292 VSETIVPDIIVRPSSTGGWLVEINPDTLPRVLINQSYFAEVSKHKARAGEDQDFLSECMQ 351
            +E ++PD+ V     G WLV INPD++P++ INQ Y   +  + A    + +++   +Q
Sbjct: 280 HAEYVIPDVSVYKEQ-GRWLVTINPDSVPKLKINQQYADLMRGNNA----ESNYIRTNLQ 334

Query: 352 TAHWLTRSLDQRARTIMKVASEIVRQQDAFLINGVDQLRPLNLKTVADAIKMHESTVSRV 411
            A WL +SL+ R  T++KVA  IV  Q  F   G + ++P+ L  VA A++MHEST+SRV
Sbjct: 335 EAKWLIKSLESRNETLLKVAKCIVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRV 394

Query: 412 TSKKYMLTPRGLFELKYFFSVSISAVEGGDSHSAEAVRHRIKAMIAQEAAEAVLSDDDIV 471
           T++KYM TPRG+FELKYFFS  +S   GG+  S+ A+R  IK ++A E     LSD  I 
Sbjct: 395 TTQKYMHTPRGIFELKYFFSSHVSTDNGGEC-SSTAIRALIKKLVAAENPAKPLSDSKIA 453

Query: 472 DNLKKTGIDIARRTVAKYREAMNIPSSVQRRR 503
             L   GI +ARRT+AKYRE++ I  S QR+R
Sbjct: 454 TLLADQGIQVARRTIAKYRESLGIAPSSQRKR 485