Pairwise Alignments

Query, 298 a.a., formamidopyrimidine-DNA glycosylase from Agrobacterium fabrum C58

Subject, 291 a.a., bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase from Rhodopseudomonas palustris CGA009

 Score =  340 bits (873), Expect = 2e-98
 Identities = 172/298 (57%), Positives = 207/298 (69%), Gaps = 7/298 (2%)

Query: 1   MPELPEVETVRRGLAPAMEGARVRKLHLGRPDLRFPFPADFAGLIEGKTIISLGRRAKYL 60
           MPELPEVETVRRGL PAMEG R+ +    R +LRFP   DF   + G+T+  LGRRAKYL
Sbjct: 1   MPELPEVETVRRGLQPAMEGFRIDRAVAHRENLRFPLQKDFVARLTGQTVTGLGRRAKYL 60

Query: 61  LIELEDGLTIVSHLGMSGSFRIEAEKGEGGEAPGAFHYARSKDGKHDHVVFHLDKGEERV 120
           L +L  G  ++ HLGMSGSFR+    GE    PG FHY RS+D  HDHVVF +  G    
Sbjct: 61  LADLSSGDVLLMHLGMSGSFRVVEADGE--TRPGEFHYPRSEDRTHDHVVFEMASGAR-- 116

Query: 121 CVIYNDPRRFGFMHLVERNKLDLYPAFAELGPEPTGNALSADYLASRFEGKSQPLKSTLL 180
            V++NDPRRFGFM +  R++++  P    LGPEP GNA  A  LA    GK   LK+ LL
Sbjct: 117 -VVFNDPRRFGFMKVFPRSEIETEPHLKGLGPEPLGNAFDASLLAKACAGKQTSLKAALL 175

Query: 181 DQKIIAGLGNIYVCEALWRAHLSPLRAAGTLVTTRGKPKAQLIDLTEKIRDVIADAIAAG 240
           DQ+++AGLGNIYVCEAL+RAHLSP R A TL   + +P    + LTE IR+V+ +AI AG
Sbjct: 176 DQRVVAGLGNIYVCEALFRAHLSPKRKASTLANRKDEPTDHAVRLTEAIREVLGEAIKAG 235

Query: 241 GSSLRDHIQTDGTLGYFQHSFSVYDQEGQPCRTPGCGGTVERVVQAGRSTFYCAACQK 298
           GSSLRDH QT G LGYFQH+F VYD+EG+PC  P CGGTV+R VQ GRSTF+C  CQK
Sbjct: 236 GSSLRDHRQTSGELGYFQHAFKVYDREGEPC--PTCGGTVQRFVQNGRSTFWCPKCQK 291