Pairwise Alignments

Query, 298 a.a., formamidopyrimidine-DNA glycosylase from Agrobacterium fabrum C58

Subject, 271 a.a., DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) from Sphingomonas koreensis DSMZ 15582

 Score =  276 bits (705), Expect = 5e-79
 Identities = 146/298 (48%), Positives = 195/298 (65%), Gaps = 28/298 (9%)

Query: 1   MPELPEVETVRRGLAPAMEGARVRKLHLGRPDLRFPFPADFAGLIEGKTIISLGRRAKYL 60
           MPELPEVET  RGLAPA+EG R+R++ + RPDLR P P D    + G ++ +LGRRAKY 
Sbjct: 1   MPELPEVETTVRGLAPALEGRRIRRVLMRRPDLRRPMPQDLGQRLTGASVTALGRRAKYG 60

Query: 61  LIELEDGLTIVSHLGMSGSFRIEAEKGEGGEAPGAFHYARSKDGKHDHVVFHLDKGEERV 120
           LI+ + G T++ HLGMSG +R++                 S+   HDH++   D+G    
Sbjct: 61  LIDTDRGDTMIFHLGMSGRWRVDP----------------SETLTHDHLILETDEGRS-- 102

Query: 121 CVIYNDPRRFGFMHLVERNKLDLYPAFAELGPEPTGNALSADYLASRFEGKSQPLKSTLL 180
            +  NDPRRFG + LV  + LD +PAFA +GPEP G   +A +LA+ F+G++ P+K+ LL
Sbjct: 103 -LALNDPRRFGSIDLVPTDALDAWPAFAAMGPEPLGPDFTAAHLAAAFDGRAAPVKALLL 161

Query: 181 DQKIIAGLGNIYVCEALWRAHLSPLRAAGTLVTTRGKPKAQLIDLTEKIRDVIADAIAAG 240
           DQ+I+AGLGNIYVCEAL  + ++P RAAG + T R      L  L + IR V+A AI AG
Sbjct: 162 DQRIVAGLGNIYVCEALHMSGIAPTRAAGRIATPR------LAQLVDAIRAVLASAIEAG 215

Query: 241 GSSLRDHIQTDGTLGYFQHSFSVYDQEGQPCRTPGCGGTVERVVQAGRSTFYCAACQK 298
           GSSLRD+ + DG LGYF   + VY +EG+PC    CG  V+R V +GRSTF+CA CQK
Sbjct: 216 GSSLRDYARPDGELGYFSKQWRVYGREGEPCL---CGAPVQRRVDSGRSTFFCAKCQK 270