Pairwise Alignments

Query, 298 a.a., formamidopyrimidine-DNA glycosylase from Agrobacterium fabrum C58

Subject, 365 a.a., formamidopyrimidine-DNA glycosylase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  133 bits (335), Expect = 5e-36
 Identities = 79/202 (39%), Positives = 114/202 (56%), Gaps = 13/202 (6%)

Query: 97  HYARSKDGKHDHVVFHLDKGEERVCVIYNDPRRFGFMHLVERNKLDLYPAFAELGPEPTG 156
           H   +  G H  VVF L+ G     + ++D R+FG++  + R  L L+P + +LGPEP  
Sbjct: 177 HPPATPAGIHTRVVFDLEGGTR---LFFDDARKFGYVRCITRRSLALWPFWRDLGPEPLE 233

Query: 157 NALSADYLASRFEGKSQPLKSTLLDQKIIAGLGNIYVCEALWRAHLSPLRAAGTLVTTRG 216
               A   A+R   +   +K+ LLDQK++AG+GNIY  E+L+RA + P   A TL   R 
Sbjct: 234 T--EARGFAARLARRRGRIKALLLDQKVVAGVGNIYADESLFRAGIRPDTQAHTLTPER- 290

Query: 217 KPKAQLIDLTEKIRDVIADAIAAGGSSLRDHIQTDGTLGYFQHSFSVYDQEGQPCRTPGC 276
                L  L   ++DV+ ++IA  GSS+RD+    G  G FQ+SF VY + GQPCR   C
Sbjct: 291 -----LFALHGHLQDVLRESIAECGSSIRDYRDAHGDAGAFQNSFRVYGRGGQPCR--HC 343

Query: 277 GGTVERVVQAGRSTFYCAACQK 298
           G T+     AGR+T +C  CQ+
Sbjct: 344 GTTLATAQVAGRTTVFCPQCQR 365



 Score = 52.4 bits (124), Expect = 2e-11
 Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 1  MPELPEVETVRRGLAPAMEGARVRKLHLGRP-DLRFPF--PADFAGLIEGKTIISLGRRA 57
          MPELPEVET+  GL PA+ G R+  + +  P  L  P   PA F   ++G+ I  +GRR 
Sbjct: 1  MPELPEVETIACGLRPALSGRRIVGVTVHNPGTLEGPLCTPAAFTEAVQGQRIADVGRRG 60

Query: 58 KYLLIELEDGLTIVSHLG 75
          K LL+     L  V H G
Sbjct: 61 KLLLVAFA-SLPPVGHAG 77