Pairwise Alignments

Query, 327 a.a., transcriptional regulator, AraC family from Agrobacterium fabrum C58

Subject, 342 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Pseudomonas fluorescens FW300-N2E2

 Score =  119 bits (299), Expect = 8e-32
 Identities = 93/307 (30%), Positives = 142/307 (46%), Gaps = 11/307 (3%)

Query: 22  LDIAGPLQVIRYANN----EQNDVFFDCRYIAAQEKQQSSIGLGICGLETLPATLPENAF 77
           LD+ GP +V  +AN     +      +     A E  +SS G+ +   +TL     +N  
Sbjct: 30  LDVTGPAEVFAFANRLHRGDTAPYLLELVAAGANEHLESSTGIALMAHKTLDQERSDNEA 89

Query: 78  L--LISGSTSRSESEPETRRERQALAAWLRRVVGLDTTVISICSGALLAGEAGLFDGRSC 135
           +  LI  S  +++ + +     ++   W+R        V SIC GA    E GL DGR  
Sbjct: 90  IDTLIVTSGWKAQEQVD-----ESAINWIRTKSESVRRVCSICVGAFALAETGLLDGRRA 144

Query: 136 TTHSDCIETLRRVAPLSQVAENRLFVEDGNRFSSAGISTGIDLMLHVVSRLTSLAVAARI 195
           TTH     +L    P  QV  N ++V+DGN ++SAGIS GIDL L +VS      VA  I
Sbjct: 145 TTHWRMARSLADSYPQVQVDPNPIWVKDGNVYTSAGISAGIDLALALVSEDLGDEVAMEI 204

Query: 196 AQTMVVYLRRNGNDPQISPWLTGRNHMHPAIHRVQDRVMAEPARDWSLERLADIAALSER 255
           A+ +V++LRR G   Q S  L  ++     +  +   +      D ++E LAD  + S R
Sbjct: 205 AKNLVLFLRRPGGQAQFSVALQSQHVPGSNLDELCLWIAEHLHSDLTVEILADKFSTSVR 264

Query: 256 HLSRLFREHTGISVIDYVNLMRVNLARDILSNSRLDMEAIAERAGFASARHLRRVWQQHN 315
            L RLF+     +   YV  +R+  A   +      ME +A R+G+ S   LR+ + +  
Sbjct: 265 TLIRLFQRELQTTPAKYVEDVRIEAACRSIELGGRSMEEVARRSGYHSVDVLRKAFVRRI 324

Query: 316 RYPPSHY 322
              P  Y
Sbjct: 325 GVSPKEY 331