Pairwise Alignments

Query, 365 a.a., transcriptional regulator, AraC family from Agrobacterium fabrum C58

Subject, 365 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  163 bits (412), Expect = 8e-45
 Identities = 113/351 (32%), Positives = 188/351 (53%), Gaps = 21/351 (5%)

Query: 3   VLFIPLPFVVGLLLVVMFI-VFLRSGDDVRTNRAFLASIALCAVQSVLVGLRWGYGISEM 61
           +L IP+PFVV L+L+++ + ++LR  +  ++   FL    LCA  + +VGLRW    S +
Sbjct: 19  MLMIPVPFVVSLMLLLLAVTLYLRLAEQAKSACLFLV---LCAATTAVVGLRWTVDWSAL 75

Query: 62  RYALPILAACLPPLIYIAFRGLMGAGVESRRVMLASLALSPLLIVVLEFAFP---AAIDI 118
           R A PILA+ +P   +  F      G+      L+     P+L++V   A P     +D 
Sbjct: 76  RMAQPILASLIPVAAWCTFTRTHEKGLSRCYKHLSG----PILVLVSLLAQPFWSLPLDE 131

Query: 119 ALITIFVGHAVALLLLGRKGPDGLDEAQFASVASAHRALIIAAVALCVSALFDLLVFFDF 178
            L  I++ + +AL+    +    +  A F    +  RA  IA   L  SAL D  +  DF
Sbjct: 132 ILTAIYLFYGIALVRYSSQDALRIYVA-FNHWENVKRAENIAGWMLLFSALIDSAMSLDF 190

Query: 179 EWAQGQNVAALVSNANLFGLLLIGLMAALAGKSKAPQ---------TAAEPISDLSSPAE 229
            + QG+    +++  ++  + ++     + G S +           T+ E    L+    
Sbjct: 191 IYNQGRFSLYILTVGHVILIPVLAFAVIVVGVSTSSSDEVANLELTTSHEVKETLTDEGM 250

Query: 230 PSEQDRDIVARVDRLMEVQALYRDENLNLSRLARRLGLPSRQISGAINRSLGVNVSQYVN 289
           P  + ++IVA  DR M  +  Y D  L LS+L+R+LG+P++QIS A+N+    N+S+ +N
Sbjct: 251 PEARAQEIVALFDRQMREKTHYLDPELTLSKLSRKLGIPAKQISAAVNQVHQKNISKLIN 310

Query: 290 QLRIREACRLLEETEQSVTAIMLSAGFQTKSNFNREFRRVTGMSPVDWRER 340
           + RI  A   L +++ S+T I +++GFQTKSNFNREF RVTGM+P ++R++
Sbjct: 311 EYRIDHALWALTQSDDSITQIFMNSGFQTKSNFNREFSRVTGMTPSEYRKQ 361