Pairwise Alignments

Query, 527 a.a., component of type IV pilus from Agrobacterium fabrum C58

Subject, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

 Score = 66.2 bits (160), Expect = 4e-15
 Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 16/199 (8%)

Query: 277 SRIASGAIGSGSLRFASYLNAMEQAGVMRTLAEPSLTAISGEQAKFYVGGDFRLAAEQEV 336
           S I   A+      + + +NA+        L+ PS+T +   +A F VG +  +      
Sbjct: 429 SSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGSTA 488

Query: 337 DIDKETGRPTITRTTNTVDYGITLNFKPVVLSPGRISLKIETNVSEPTYEGNVVTGNGGR 396
             + +    T+ R     + GI L   P +     + L IE  VS      NV+  NG  
Sbjct: 489 GSNNDNPFQTVDRK----EVGIKLKVVPQINEGNSVQLNIEQEVS------NVLGANGAV 538

Query: 397 TIPGSTYMSVRKRETSTTVELPSGGSIVIAGLVQDNVRQAMSGLPGMSKIPIFGTLFRSK 456
            +         KR+ +T+V +  G  +V+ GL+ +   ++ S +P +  IP+ G LFRS 
Sbjct: 539 DV------RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRST 592

Query: 457 EFLRNETELVIIATPYLVR 475
                +  L++   P ++R
Sbjct: 593 SSQVEKKNLMVFIKPTIIR 611