Pairwise Alignments

Query, 527 a.a., component of type IV pilus from Agrobacterium fabrum C58

Subject, 484 a.a., putative bacterial type II/III secretion system protein from Phaeobacter inhibens DSM 17395

 Score =  223 bits (568), Expect = 1e-62
 Identities = 153/493 (31%), Positives = 246/493 (49%), Gaps = 60/493 (12%)

Query: 45  AEAQSASIVRITESGTGIRKRLKLGLNKALVIDLPEDAHDILVADPSLADAVTRTSRRIY 104
           A+A   + +R+ + GT     L++ +N+A+V++      ++ +A+PS+AD  + + R IY
Sbjct: 38  ADAAWGNGLRVVKKGTAAN--LEVPMNRAVVVESDVPFSELSIANPSIADISSLSDRTIY 95

Query: 105 LFGKMVGQTNIFIFGDGGREIVSLDLEVERDISGLEANIRRFIPESDIKVEIVSDNIVLT 164
           + GK  G T + +    GR I ++D+ V  D+S  +  +R+ +P   I+V   +D IVL+
Sbjct: 96  VLGKSPGLTTLTLLDASGRLITNVDVRVAADVSEFKERLRQILPGEKIEVRTANDGIVLS 155

Query: 165 GSVRTPQDSARAVQLADAFLKGGEATTRNISLTGGNNGGDAAIFAERRQVSQIVNMLTIE 224
           G V +     RA+ LA                             ER    ++ N++++ 
Sbjct: 156 GVVSSSARLQRALDLA-----------------------------ERYAPERVSNLMSVG 186

Query: 225 GEDQVTLKVTVAEVSRQVLKQL----GFNGSISSSTSGNGFEFANPSNLGNAIDG---AS 277
           G  QV LKV  AE+ R V K L    G  G  S   +G          L N++ G   A 
Sbjct: 187 GVQQVMLKVRFAEMQRTVSKSLSASLGVKGGNSVGVNGGTSTLNTQGALTNSLSGNIPAG 246

Query: 278 RIASGAI----GSGSLRFASYLNAMEQAGVMRTLAEPSLTAISGEQAKFYVGGDFRLAAE 333
              +GA      +G+ +    L A+EQ GV+RTLAEP+L+A+SG++AKF  GG++ +   
Sbjct: 247 NDNTGAFVFGFNAGAFQVNLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEYPIPVA 306

Query: 334 QEVDIDKETGRPTITRTTNTVDYGITLNFKPVVLSPGRISLKIETNVSEPTYEGNVVTGN 393
           QE  I     +P          +GI LNF P V+    I+L+++  VS        +   
Sbjct: 307 QEDGIITIEFKP----------FGIELNFVPRVVDADVINLEMKAAVS-------AIDPT 349

Query: 394 GGRTIPGSTYMSVRKRETSTTVELPSGGSIVIAGLVQDNVRQAMSGLPGMSKIPIFGTLF 453
               + G +  +  +RETSTTVEL  G S  IAGL++D  R + S LP +  +P+ G+LF
Sbjct: 350 NSIELNGLSIAAFSRRETSTTVELRDGESFAIAGLIRDEFRDSSSQLPWIGDVPVLGSLF 409

Query: 454 RSKEFLRNETELVIIATPYLVRPVARNQIARPDDNFNPENDAAMYFMNRVNK-VYGRKDQ 512
           RS  + R +TELVII + +LV P     ++ P D   P +++ ++ M RV K   G   +
Sbjct: 410 RSANYQRAQTELVIIVSAHLVTPTRGEALSLPTDRIRPPSESELFLMGRVAKGQKGPASE 469

Query: 513 VQAAPYQGSVGFI 525
           V    + GS G++
Sbjct: 470 VAKQDFNGSYGYV 482