Pairwise Alignments

Query, 546 a.a., ABC transporter, nucleotide binding/ATPase protein (peptide) from Agrobacterium fabrum C58

Subject, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  420 bits (1079), Expect = e-122
 Identities = 226/555 (40%), Positives = 346/555 (62%), Gaps = 33/555 (5%)

Query: 9   LLSVRDLSVAFHQGGATSVAVDHVSFDLMPGEVVALVGESGSGKSVTANSILKLLPYPAA 68
           LL V++L + +        AV  ++ D+  GE+V +VGESG+GKS   N+++ LL  P  
Sbjct: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLS-PPG 61

Query: 69  SHPSGKILFDGKDMLTLPERALRAVRGNDITMIFQEPMTSLNPLHTIERQIGEILELHQA 128
           +   G++  +G+ +  L  +A+R VRG+ I  IFQ+PMTSLNPL T+E Q+ E +  +  
Sbjct: 62  TIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQ 121

Query: 129 ITGAEARQRTLELLLQVGIREPEKRLKAYPHELSGGQRQRVMIAMALANRPKLLIADEPT 188
           ++  EA QR L L+ QVGI +PE RLK YPH+ SGG RQRV+IA+ALA  P L+IADEPT
Sbjct: 122 VSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPT 181

Query: 189 TALDVTVQAQILELLGDLKTQHGMSMLFITHDLGIVRKFADRVCVMTKGKIVETGTVEQV 248
           TALDV++Q QIL L+ +L  ++ +  + +THD+G+V    DRV VM +G +VE G   +V
Sbjct: 182 TALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKV 241

Query: 249 FTDPQHAYTRHLLAAEPKGEP-----------PHSDASKPV------------------- 278
              P+H YTR L++A P+ +              +   KP+                   
Sbjct: 242 LGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTGP 301

Query: 279 VMQGDDIKVWFPIKAGLMRRVIDHVKAVDGIDITLRAGQTVGVVGESGSGKTTLGLALSR 338
           +++ +++ + F  K  L     ++V+A + +   +  G+T G+VGESGSGK+T+   ++ 
Sbjct: 302 LLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAG 361

Query: 339 LI-ASKGRISFIGQSIDSYSYE-MMKPLRNRLQVVFQDPYGSLSPRMSVGEIIAEGLKVH 396
           L   + GR++F G  + +   E   +PLR ++Q+VFQ+PY S++PRM + +IIAE ++ H
Sbjct: 362 LYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFH 421

Query: 397 ERSLSADERDTRVATALEEVGLDPATRWRYPHEFSGGQRQRIAIARAMVLKPRFVMLDEP 456
           + + S  E    V   LE VGL      +YPHEFSGGQRQRI+IARA+  +PR ++ DEP
Sbjct: 422 KLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDEP 481

Query: 457 TSALDMSVQAQVVDLLRDLQAKHELAYLFISHDLRVVKALANDLIVMRHGKVVESGPAAE 516
           TSALD+SVQAQ+++LL+DLQ +  L  LFISHDL V++ + + + VM+ G ++E  P  +
Sbjct: 482 TSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQ 541

Query: 517 IFANPQQDYTKALLA 531
           +F +PQ +Y+K L++
Sbjct: 542 LFTDPQHEYSKKLIS 556



 Score =  189 bits (479), Expect = 3e-52
 Identities = 118/269 (43%), Positives = 159/269 (59%), Gaps = 15/269 (5%)

Query: 6   TQPLLSVRDLSVAFHQGGATSV-------AVDHVSFDLMPGEVVALVGESGSGKSVTANS 58
           T PLL V ++++ F    +          A ++VSF +  GE   LVGESGSGKS  A  
Sbjct: 299 TGPLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARV 358

Query: 59  ILKLLPYPAASHPSGKILFDGKDMLTLPERALRAVRGNDITMIFQEPMTSLNPLHTIERQ 118
           I  L    A     G++ F+G D+  L     R      + M+FQ P TS+NP   I   
Sbjct: 359 IAGLYQPNA-----GRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDI 413

Query: 119 IGEILELHQAITG-AEARQRTLELLLQVGIREPEKRLKAYPHELSGGQRQRVMIAMALAN 177
           I E +  H+     +E RQ   +LL  VG+ +    LK YPHE SGGQRQR+ IA ALA 
Sbjct: 414 IAEPIRFHKLTRSESETRQIVNDLLEHVGLGKMAG-LK-YPHEFSGGQRQRISIARALAT 471

Query: 178 RPKLLIADEPTTALDVTVQAQILELLGDLKTQHGMSMLFITHDLGIVRKFADRVCVMTKG 237
           RP+LLI DEPT+ALDV+VQAQIL LL DL+ +  ++MLFI+HDL ++R+  DRV VM  G
Sbjct: 472 RPRLLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMG 531

Query: 238 KIVETGTVEQVFTDPQHAYTRHLLAAEPK 266
            ++E    EQ+FTDPQH Y++ L++  P+
Sbjct: 532 TLLEVAPTEQLFTDPQHEYSKKLISLMPE 560



 Score =  158 bits (400), Expect = 5e-43
 Identities = 86/236 (36%), Positives = 151/236 (63%), Gaps = 9/236 (3%)

Query: 305 AVDGIDITLRAGQTVGVVGESGSGKTTLGLALSRLIASKGRIS-----FIGQSIDSYSYE 359
           AV  + + ++ G+ VGVVGESG+GK+T+G A+  L++  G I+       G+ I   S +
Sbjct: 22  AVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGTIAGGEVYLNGEKISGLSPQ 81

Query: 360 MMKPLR-NRLQVVFQDPYGSLSPRMSVGEIIAEGLKVHERSLSADERDTRVATALEEVGL 418
            M+ +R +++  +FQDP  SL+P  +V   + E +  + + +SA+E   R  + +++VG+
Sbjct: 82  AMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQ-VSAEEAYQRALSLMKQVGI 140

Query: 419 -DPATRWR-YPHEFSGGQRQRIAIARAMVLKPRFVMLDEPTSALDMSVQAQVVDLLRDLQ 476
             P  R + YPH+FSGG RQR+ IA A+  +P  ++ DEPT+ALD+S+Q Q+++L+R+L 
Sbjct: 141 PQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTTALDVSIQDQILNLIRELC 200

Query: 477 AKHELAYLFISHDLRVVKALANDLIVMRHGKVVESGPAAEIFANPQQDYTKALLAA 532
            K+ +  + ++HD+ VV  + + + VM  G +VE GP A++   P+  YT++L++A
Sbjct: 201 KKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVLGTPEHPYTRSLISA 256